MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:79.8 nTPM
HPA:79.8 nTPM
GTEx:63.0 nTPM
FANTOM5:116.0 Scaled Tags Per Million
Pig:93.3 nTPM
Mouse:241.3 nTPM
Allen mouse:13.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 79.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 65.5
2019 Male, age 18, unknown 73.6
1827 Male, age 72, unknown 72.1
2411 Female, age 72, unknown 72.1
2828 Female, age 72, unknown 70.0
1833 Male, age 53, unknown 69.1
1870 Female, age 42, unknown 67.2
2219 Male, age 76, both hemispheres 66.2
1830 Male, age 51, unknown 64.4
2666 Male, age 74, left hemisphere 54.2
2586 Male, age 75, left hemisphere 46.4
Dorsal raphe nucleus
nTPM: 72.0
2298 Female, age 72, unknown 98.5
2750 Male, age 76, both hemispheres 68.2
1828 Male, age 53, unknown 66.6
2047 Male, age 72, unknown 66.3
2016 Female, age 72, unknown 60.3
Inferior colliculus
nTPM: 72.0
2097 Female, age 72, unknown 79.5
1848 Female, age 42, unknown 73.0
2849 Male, age 72, unknown 67.8
1890 Male, age 53, unknown 67.6
Median raphe nucleus
nTPM: 71.5
2220 Male, age 76, midline 71.5
Pedunculopontine tegmental nucleus
nTPM: 73.8
2334 Male, age 80, both hemispheres 75.6
2338 Male, age 61, both hemispheres 74.2
1921 Female, age 85, both hemispheres 71.7
Periaquaductal grey, anterior
nTPM: 66.5
1947 Male, age 18, unknown 67.0
1795 Male, age 51, unknown 66.8
2502 Female, age 75, unknown 65.8
Periaquaductal grey, dorsal
nTPM: 67.8
2850 Male, age 76, both hemispheres 73.1
1840 Male, age 53, unknown 68.4
1831 Male, age 72, unknown 65.6
2464 Female, age 72, unknown 64.2
Periaquaductal grey, lateral
nTPM: 75.6
2272 Male, age 74, both hemispheres 97.3
2140 Male, age 76, both hemispheres 65.5
2053 Male, age 18, unknown 64.1
Pretectal area
nTPM: 79.8
2273 Male, age 74, both hemispheres 99.3
1944 Female, age 72, unknown 86.8
2007 Male, age 72, unknown 85.5
1817 Female, age 42, unknown 85.2
1816 Male, age 51, unknown 83.5
2667 Female, age 75, unknown 79.9
2224 Female, age 72, unknown 79.7
1815 Male, age 53, unknown 78.7
2407 Male, age 75, both hemispheres 73.9
2825 Male, age 18, unknown 64.3
2316 Male, age 76, right hemisphere 60.7
Red nucleus
nTPM: 64.6
2785 Male, age 18, unknown 72.7
2725 Female, age 75, unknown 71.4
1821 Female, age 72, unknown 69.5
2823 Male, age 76, right hemisphere 68.6
2769 Male, age 72, unknown 66.1
2503 Female, age 72, unknown 64.6
1954 Female, age 42, unknown 63.1
1865 Male, age 51, unknown 63.0
2227 Male, age 72, unknown 61.5
1904 Male, age 53, unknown 59.7
2584 Male, age 75, left hemisphere 58.8
2588 Male, age 74, left hemisphere 56.2
Substantia nigra
nTPM: 68.4
1889 Female, age 72, unknown 81.1
2409 Female, age 72, unknown 76.6
1941 Male, age 53, unknown 74.4
1916 Female, age 42, unknown 73.4
2241 Male, age 72, unknown 68.3
1851 Male, age 51, unknown 68.0
2699 Male, age 18, unknown 66.0
2590 Female, age 75, unknown 65.5
2665 Male, age 74, both hemispheres 56.9
2583 Male, age 75, right hemisphere 53.8
Superior colliculus
nTPM: 66.8
2087 Female, age 72, unknown 85.9
1895 Male, age 76, right hemisphere 74.1
1796 Male, age 53, unknown 71.1
2261 Male, age 18, unknown 70.6
2587 Male, age 74, left hemisphere 67.9
1839 Male, age 51, unknown 66.4
1913 Female, age 42, unknown 63.8
1995 Male, age 72, unknown 62.4
2668 Female, age 75, unknown 60.5
2664 Male, age 75, both hemispheres 45.6
Ventral tegmental area
nTPM: 70.2
2410 Female, age 72, unknown 85.4
2218 Male, age 76, both hemispheres 76.7
1915 Female, age 42, unknown 69.7
1942 Male, age 51, unknown 64.6
2021 Male, age 53, unknown 63.9
2223 Female, age 72, unknown 61.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 63.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 63.0
Samples: 139

Max nTPM: 107.7
Min nTPM: 37.8
Std nTPM: 13.7
Median nTPM: 61.8
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 107.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 106.4
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 106.2
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 95.9
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 91.2
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 91.0
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 89.7
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 88.0
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 85.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 85.7
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 85.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 116.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 116.0
FF:10158-103A5 76 years, female 116.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 93.3
Pig sample Sample description nTPM
Midbrain
nTPM: 86.9
Samples: 4

Max nTPM: 110.5
Min nTPM: 72.4
Sample A Female 81.8
Sample B Female 72.4
Sample C Male 110.5
Sample D Male 82.8
Periaqueductal gray
nTPM: 57.6
Samples: 3

Max nTPM: 62.1
Min nTPM: 51.7
Sample B Female 58.9
Sample C Male 62.1
Sample D Male 51.7
Substantia nigra
nTPM: 81.8
Samples: 4

Max nTPM: 108.9
Min nTPM: 56.6
Sample A Female 108.9
Sample B Female 68.1
Sample C Male 93.4
Sample D Male 56.6
Superior colliculi
nTPM: 93.3
Samples: 4

Max nTPM: 107.8
Min nTPM: 73.1
Sample A Female 101.2
Sample B Female 91.2
Sample C Male 107.8
Sample D Male 73.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 241.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 241.3
Samples: 4

Max nTPM: 246.4
Min nTPM: 233.4
Sample A Male 239.4
Sample B Male 246.4
Sample C Female 245.8
Sample D Female 233.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 13.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 13.9
69015578 Antisense, RP_050315_01_C06, Mouse strain C57BL/6J (56 days, male) 13.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.