BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Low
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:17.2 nTPM
HPA:17.2 nTPM
GTEx:44.3 nTPM
FANTOM5:58.5 Scaled Tags Per Million
Pig:5.6 nTPM
Mouse:21.3 nTPM
Allen mouse:0.2 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA053126
Glial cells Low
Neuronal cells Low



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 17.2
Sample id Sample description nTPM
Caudate nucleus
nTPM: 8.3
2289 Male, age 61, right hemisphere 16.0
1781 Male, age 74, unknown 11.7
1854 Male, age 80, left hemisphere 8.8
1857 Female, age 85, left hemisphere 8.8
2290 Female, age 72, unknown 8.8
2288 Male, age 75, left hemisphere 6.7
2846 Female, age 79, unknown 3.3
2481 Female, age 94, left hemisphere 2.3
Claustrum
nTPM: 15.1
2568 Male, age 61, both hemispheres 27.3
2645 Female, age 72, unknown 24.4
2284 Female, age 91, both hemispheres 20.9
2491 Male, age 75, both hemispheres 17.6
2198 Male, age 80, both hemispheres 13.2
2292 Female, age 85, both hemispheres 11.6
1956 Male, age 74, unknown 8.5
2392 Female, age 94, both hemispheres 6.8
2196 Female, age 79, unknown 5.6
Globus pallidus, externus
nTPM: 6.9
2646 Male, age 61, right hemisphere 14.4
2567 Female, age 72, unknown 13.7
2772 Female, age 79, unknown 4.2
1996 Male, age 80, right hemisphere 2.2
2395 Male, age 75, both hemispheres 0.1
Globus pallidus, internus
nTPM: 3.5
2111 Female, age 85, right hemisphere 9.6
2566 Female, age 72, unknown 7.6
1818 Male, age 74, unknown 4.7
2037 Male, age 80, right hemisphere 2.9
2287 Male, age 75, right hemisphere 0.0
2483 Female, age 94, right hemisphere 0.0
2778 Female, age 91, both hemispheres 0.0
Nucleus accumbens
nTPM: 7.5
1783 Male, age 74, unknown 12.0
1806 Female, age 85, left hemisphere 11.8
2824 Male, age 61, right hemisphere 11.1
2732 Male, age 80, right hemisphere 11.0
1856 Female, age 91, right hemisphere 6.5
2286 Male, age 75, left hemisphere 4.1
2698 Female, age 72, unknown 2.8
2391 Female, age 94, left hemisphere 0.6
Nucleus basalis of Meynert
nTPM: 7.7
2569 Male, age 61, both hemispheres 15.5
2484 Female, age 94, left hemisphere 6.7
2393 Male, age 80, right hemisphere 5.7
2821 Male, age 75, both hemispheres 2.8
Nucleus of the diagonal band
nTPM: 16.9
2029 Male, age 61, right hemisphere 28.5
2195 Female, age 85, both hemispheres 17.0
2775 Male, age 80, right hemisphere 16.1
1979 Male, age 74, unknown 12.7
1812 Female, age 91, both hemispheres 10.2
Olfactory tubercle
nTPM: 16.0
2487 Female, age 94, left hemisphere 19.5
2856 Male, age 75, right hemisphere 18.1
1998 Female, age 91, both hemispheres 17.8
1846 Male, age 80, right hemisphere 8.7
Putamen
nTPM: 8.3
2647 Male, age 75, left hemisphere 15.0
2489 Female, age 72, unknown 11.5
1838 Male, age 80, right hemisphere 9.2
1829 Male, age 74, unknown 7.1
2466 Female, age 79, unknown 7.1
1937 Female, age 91, right hemisphere 6.8
2482 Female, age 94, left hemisphere 1.1
Septal nuclei
nTPM: 17.2
2394 Male, age 61, left hemisphere 26.7
2059 Female, age 85, both hemispheres 23.8
1960 Male, age 74, unknown 19.4
2031 Female, age 72, unknown 14.1
2199 Male, age 80, right hemisphere 12.5
2009 Female, age 91, both hemispheres 11.9
2629 Female, age 94, right hemisphere 11.9

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 44.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 40.9
Samples: 246

Max nTPM: 81.8
Min nTPM: 14.4
Std nTPM: 11.6
Median nTPM: 40.8
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 81.8
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 71.6
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 68.6
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 64.8
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 64.0
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 63.0
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 62.8
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 62.2
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 61.8
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 61.6
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 61.6
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 44.3
Samples: 246

Max nTPM: 76.1
Min nTPM: 9.8
Std nTPM: 13.4
Median nTPM: 44.2
GTEX-12ZZW-0011-R6a-SM-5DUVZ 50-59 years, male 76.1
GTEX-11DXW-0011-R6a-SM-DO11N 40-49 years, male 75.5
GTEX-14PQA-0011-R6b-SM-6AJAM 50-59 years, female 73.7
GTEX-13O3O-0011-R6b-SM-5P9GY 60-69 years, female 71.9
GTEX-1GMR8-0011-R6b-SM-CE6RC 50-59 years, female 71.0
GTEX-1GMRU-0011-R6b-SM-A9G3B 50-59 years, male 70.8
GTEX-14ASI-0011-R6a-SM-5S2UZ 60-69 years, male 70.6
GTEX-X4XX-0011-R6B-SM-46MWP 60-69 years, male 68.3
GTEX-11DZ1-0011-R6b-SM-DNZZG 50-59 years, male 67.8
GTEX-XMD1-0011-R6A-SM-4AT5K 60-69 years, male 67.2
GTEX-13FLV-0011-R6a-SM-5KLZ4 50-59 years, male 66.7
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Brain - Putamen (basal ganglia)
Average nTPM: 40.4
Samples: 205

Max nTPM: 78.6
Min nTPM: 12.6
Std nTPM: 11.5
Median nTPM: 39.9
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 78.6
GTEX-1GMR8-0011-R7b-SM-CJI2I 50-59 years, female 76.8
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 69.5
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 66.7
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 65.0
GTEX-1192X-0011-R7b-SM-DNZZC 50-59 years, male 62.0
GTEX-1H3O1-0011-R7a-SM-CE6SJ 60-69 years, male 61.4
GTEX-11TTK-0011-R7b-SM-DNZZZ 60-69 years, female 61.0
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 60.0
GTEX-11OF3-0011-R7a-SM-57WCG 60-69 years, male 59.8
GTEX-13PVQ-0011-R7a-SM-5L3G3 50-59 years, male 59.7
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 58.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 58.5
FF:10164-103B2 76 years, female 58.5
Globus pallidus
Scaled Tags Per Million: 40.3
FF:10161-103A8 76 years, female 44.4
FF:10175-103C4 60 years, female 36.3
Nucleus accumbens
Scaled Tags Per Million: 44.5
FF:10037-101F1 23-56 years, mixed 44.5
Putamen
Scaled Tags Per Million: 50.6
FF:10176-103C5 60 years, female 50.6

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 5.6
Pig sample Sample description nTPM
Caudate
nTPM: 5.6
Samples: 4

Max nTPM: 6.4
Min nTPM: 4.3
Sample A Female 4.3
Sample B Female 6.3
Sample C Male 6.4
Sample D Male 5.4
Putamen
nTPM: 3.9
Samples: 4

Max nTPM: 4.8
Min nTPM: 2.5
Sample A Female 2.5
Sample B Female 3.9
Sample C Male 4.2
Sample D Male 4.8
Septum
nTPM: 5.2
Samples: 4

Max nTPM: 6.9
Min nTPM: 3.9
Sample A Female 4.7
Sample B Female 5.1
Sample C Male 6.9
Sample D Male 3.9
Ventral pallidum
nTPM: 4.8
Samples: 4

Max nTPM: 6.6
Min nTPM: 3.9
Sample A Female 3.9
Sample B Female 4.0
Sample C Male 6.6
Sample D Male 4.5

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 21.3
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 13.5
Samples: 4

Max nTPM: 14.5
Min nTPM: 11.8
Sample A Male 14.5
Sample B Male 14.3
Sample C Female 11.8
Sample D Female 13.4
Septum
nTPM: 21.3
Samples: 4

Max nTPM: 24.1
Min nTPM: 19.0
Sample A Male 24.1
Sample B Male 19.0
Sample C Female 22.2
Sample D Female 19.8
Ventral forebrain
nTPM: 19.5
Samples: 4

Max nTPM: 22.1
Min nTPM: 17.2
Sample A Male 22.1
Sample B Male 19.0
Sample C Female 17.2
Sample D Female 19.8

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.2
71211764 Antisense, RP_050816_02_D08, Mouse strain C57BL/6J (56 days, male) 0.2
Pallidum
Expression energy: 0.2
71211764 Antisense, RP_050816_02_D08, Mouse strain C57BL/6J (56 days, male) 0.2

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