MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:14.5 nTPM
HPA:14.5 nTPM
GTEx:19.6 nTPM
FANTOM5:15.5 Scaled Tags Per Million
Pig:19.4 nTPM
Mouse:2.5 nTPM
Allen mouse:10.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 14.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 13.9
1870 Female, age 42, unknown 15.1
1830 Male, age 51, unknown 14.7
1833 Male, age 53, unknown 14.6
2411 Female, age 72, unknown 14.4
2019 Male, age 18, unknown 14.3
2828 Female, age 72, unknown 13.6
2219 Male, age 76, both hemispheres 13.5
1827 Male, age 72, unknown 13.2
2586 Male, age 75, left hemisphere 13.0
2666 Male, age 74, left hemisphere 12.9
Dorsal raphe nucleus
nTPM: 13.6
2750 Male, age 76, both hemispheres 14.0
1828 Male, age 53, unknown 13.9
2016 Female, age 72, unknown 13.7
2047 Male, age 72, unknown 13.4
2298 Female, age 72, unknown 13.2
Inferior colliculus
nTPM: 13.9
2849 Male, age 72, unknown 14.2
1848 Female, age 42, unknown 14.0
1890 Male, age 53, unknown 14.0
2097 Female, age 72, unknown 13.5
Median raphe nucleus
nTPM: 13.3
2220 Male, age 76, midline 13.3
Pedunculopontine tegmental nucleus
nTPM: 13.9
1921 Female, age 85, both hemispheres 14.2
2338 Male, age 61, both hemispheres 13.8
2334 Male, age 80, both hemispheres 13.6
Periaquaductal grey, anterior
nTPM: 13.5
1947 Male, age 18, unknown 14.0
2502 Female, age 75, unknown 13.5
1795 Male, age 51, unknown 13.0
Periaquaductal grey, dorsal
nTPM: 13.6
2464 Female, age 72, unknown 14.3
2850 Male, age 76, both hemispheres 13.6
1831 Male, age 72, unknown 13.3
1840 Male, age 53, unknown 13.2
Periaquaductal grey, lateral
nTPM: 13.7
2272 Male, age 74, both hemispheres 14.2
2053 Male, age 18, unknown 13.9
2140 Male, age 76, both hemispheres 13.2
Pretectal area
nTPM: 13.5
2316 Male, age 76, right hemisphere 14.2
1817 Female, age 42, unknown 14.1
1815 Male, age 53, unknown 13.9
2224 Female, age 72, unknown 13.6
2273 Male, age 74, both hemispheres 13.6
2407 Male, age 75, both hemispheres 13.6
2007 Male, age 72, unknown 13.4
2667 Female, age 75, unknown 13.3
2825 Male, age 18, unknown 13.3
1816 Male, age 51, unknown 13.0
1944 Female, age 72, unknown 12.5
Red nucleus
nTPM: 14.5
1821 Female, age 72, unknown 15.8
1865 Male, age 51, unknown 15.5
2227 Male, age 72, unknown 14.9
2769 Male, age 72, unknown 14.8
2503 Female, age 72, unknown 14.6
1954 Female, age 42, unknown 14.5
1904 Male, age 53, unknown 14.4
2785 Male, age 18, unknown 14.3
2823 Male, age 76, right hemisphere 14.3
2588 Male, age 74, left hemisphere 14.0
2725 Female, age 75, unknown 13.9
2584 Male, age 75, left hemisphere 13.0
Substantia nigra
nTPM: 13.7
2409 Female, age 72, unknown 14.8
2665 Male, age 74, both hemispheres 14.3
2590 Female, age 75, unknown 14.1
2699 Male, age 18, unknown 14.1
1889 Female, age 72, unknown 14.0
2241 Male, age 72, unknown 13.3
1851 Male, age 51, unknown 13.2
1941 Male, age 53, unknown 13.1
1916 Female, age 42, unknown 13.0
2583 Male, age 75, right hemisphere 12.7
Superior colliculus
nTPM: 13.6
1895 Male, age 76, right hemisphere 15.1
1913 Female, age 42, unknown 14.4
1995 Male, age 72, unknown 14.2
1839 Male, age 51, unknown 14.0
2587 Male, age 74, left hemisphere 13.6
2668 Female, age 75, unknown 13.6
1796 Male, age 53, unknown 13.2
2664 Male, age 75, both hemispheres 12.6
2261 Male, age 18, unknown 12.5
2087 Female, age 72, unknown 12.3
Ventral tegmental area
nTPM: 13.6
2223 Female, age 72, unknown 14.3
2410 Female, age 72, unknown 13.9
1915 Female, age 42, unknown 13.5
2021 Male, age 53, unknown 13.5
2218 Male, age 76, both hemispheres 13.5
1942 Male, age 51, unknown 13.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 19.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 19.6
Samples: 139

Max nTPM: 67.0
Min nTPM: 8.9
Std nTPM: 8.5
Median nTPM: 17.1
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 67.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 59.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 44.8
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 41.7
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 40.9
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 36.0
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 33.4
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 33.4
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 32.5
GTEX-14JG1-0011-R2a-SM-5ZZVE 40-49 years, male 30.8
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 30.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 15.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 15.5
FF:10158-103A5 76 years, female 15.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 19.4
Pig sample Sample description nTPM
Midbrain
nTPM: 19.4
Samples: 4

Max nTPM: 26.7
Min nTPM: 14.0
Sample A Female 26.7
Sample B Female 15.7
Sample C Male 21.1
Sample D Male 14.0
Periaqueductal gray
nTPM: 13.8
Samples: 3

Max nTPM: 15.2
Min nTPM: 12.1
Sample B Female 15.2
Sample C Male 14.1
Sample D Male 12.1
Substantia nigra
nTPM: 16.6
Samples: 4

Max nTPM: 23.7
Min nTPM: 13.9
Sample A Female 23.7
Sample B Female 14.0
Sample C Male 14.6
Sample D Male 13.9
Superior colliculi
nTPM: 18.8
Samples: 4

Max nTPM: 22.6
Min nTPM: 15.6
Sample A Female 22.6
Sample B Female 18.1
Sample C Male 18.7
Sample D Male 15.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 2.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 2.5
Samples: 4

Max nTPM: 2.6
Min nTPM: 2.1
Sample A Male 2.5
Sample B Male 2.1
Sample C Female 2.6
Sample D Female 2.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 10.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 10.3
68797571 Antisense, RP_050210_02_F07, Mouse strain C57BL/6J (56 days, male) 20.6
77454729 Antisense, RP_070129_01_D08, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.