MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:27.2 nTPM
HPA:27.2 nTPM
GTEx:24.6 nTPM
FANTOM5:59.5 Scaled Tags Per Million
Pig:18.9 nTPM
Mouse:29.9 nTPM
Allen mouse:0.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 27.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 27.2
2586 Male, age 75, left hemisphere 31.8
2411 Female, age 72, unknown 28.5
2019 Male, age 18, unknown 28.3
1830 Male, age 51, unknown 27.9
1833 Male, age 53, unknown 27.4
2666 Male, age 74, left hemisphere 26.5
1827 Male, age 72, unknown 25.5
2828 Female, age 72, unknown 25.5
1870 Female, age 42, unknown 25.4
2219 Male, age 76, both hemispheres 25.0
Dorsal raphe nucleus
nTPM: 25.3
2750 Male, age 76, both hemispheres 29.5
2047 Male, age 72, unknown 27.5
1828 Male, age 53, unknown 24.5
2016 Female, age 72, unknown 23.4
2298 Female, age 72, unknown 21.4
Inferior colliculus
nTPM: 22.5
1890 Male, age 53, unknown 23.6
1848 Female, age 42, unknown 23.3
2849 Male, age 72, unknown 23.2
2097 Female, age 72, unknown 19.8
Median raphe nucleus
nTPM: 25.9
2220 Male, age 76, midline 25.9
Pedunculopontine tegmental nucleus
nTPM: 24.3
2334 Male, age 80, both hemispheres 25.6
2338 Male, age 61, both hemispheres 24.8
1921 Female, age 85, both hemispheres 22.6
Periaquaductal grey, anterior
nTPM: 25.0
1947 Male, age 18, unknown 25.9
1795 Male, age 51, unknown 24.9
2502 Female, age 75, unknown 24.3
Periaquaductal grey, dorsal
nTPM: 21.8
2464 Female, age 72, unknown 26.0
1840 Male, age 53, unknown 21.4
1831 Male, age 72, unknown 20.9
2850 Male, age 76, both hemispheres 18.9
Periaquaductal grey, lateral
nTPM: 23.4
2272 Male, age 74, both hemispheres 25.5
2053 Male, age 18, unknown 23.0
2140 Male, age 76, both hemispheres 21.7
Pretectal area
nTPM: 23.7
2407 Male, age 75, both hemispheres 28.1
2316 Male, age 76, right hemisphere 26.0
2273 Male, age 74, both hemispheres 25.1
1944 Female, age 72, unknown 23.8
2007 Male, age 72, unknown 23.1
1817 Female, age 42, unknown 23.0
2825 Male, age 18, unknown 22.9
1816 Male, age 51, unknown 22.7
2667 Female, age 75, unknown 22.3
1815 Male, age 53, unknown 22.1
2224 Female, age 72, unknown 22.0
Red nucleus
nTPM: 26.8
2823 Male, age 76, right hemisphere 30.1
2584 Male, age 75, left hemisphere 29.2
1865 Male, age 51, unknown 28.6
2227 Male, age 72, unknown 28.1
1904 Male, age 53, unknown 27.5
2785 Male, age 18, unknown 27.4
2588 Male, age 74, left hemisphere 26.8
2769 Male, age 72, unknown 26.7
1954 Female, age 42, unknown 26.3
2503 Female, age 72, unknown 24.5
2725 Female, age 75, unknown 23.6
1821 Female, age 72, unknown 23.2
Substantia nigra
nTPM: 26.9
1916 Female, age 42, unknown 31.7
2583 Male, age 75, right hemisphere 31.2
1941 Male, age 53, unknown 29.0
1851 Male, age 51, unknown 28.4
2241 Male, age 72, unknown 27.1
2699 Male, age 18, unknown 26.9
2590 Female, age 75, unknown 25.7
2665 Male, age 74, both hemispheres 24.1
2409 Female, age 72, unknown 23.5
1889 Female, age 72, unknown 21.3
Superior colliculus
nTPM: 25.5
2668 Female, age 75, unknown 32.6
2664 Male, age 75, both hemispheres 29.0
2087 Female, age 72, unknown 26.6
1913 Female, age 42, unknown 25.0
1796 Male, age 53, unknown 24.2
1895 Male, age 76, right hemisphere 24.0
2261 Male, age 18, unknown 24.0
1995 Male, age 72, unknown 23.9
1839 Male, age 51, unknown 23.3
2587 Male, age 74, left hemisphere 22.6
Ventral tegmental area
nTPM: 26.5
2410 Female, age 72, unknown 29.2
2223 Female, age 72, unknown 26.1
2021 Male, age 53, unknown 26.0
1915 Female, age 42, unknown 25.9
2218 Male, age 76, both hemispheres 25.9
1942 Male, age 51, unknown 25.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 24.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 24.6
Samples: 139

Max nTPM: 37.4
Min nTPM: 14.9
Std nTPM: 3.7
Median nTPM: 24.6
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 37.4
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 33.2
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 32.7
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 32.7
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 30.9
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 30.6
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 30.6
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 30.2
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 30.0
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 29.7
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 29.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 59.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 59.5
FF:10158-103A5 76 years, female 59.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 18.9
Pig sample Sample description nTPM
Midbrain
nTPM: 19.0
Samples: 4

Max nTPM: 21.4
Min nTPM: 16.4
Sample A Female 16.4
Sample B Female 18.2
Sample C Male 21.4
Sample D Male 19.8
Periaqueductal gray
nTPM: 14.9
Samples: 3

Max nTPM: 16.5
Min nTPM: 12.7
Sample B Female 15.5
Sample C Male 16.5
Sample D Male 12.7
Substantia nigra
nTPM: 18.8
Samples: 4

Max nTPM: 23.6
Min nTPM: 13.5
Sample A Female 22.6
Sample B Female 15.4
Sample C Male 23.6
Sample D Male 13.5
Superior colliculi
nTPM: 18.9
Samples: 4

Max nTPM: 20.1
Min nTPM: 17.5
Sample A Female 17.5
Sample B Female 19.5
Sample C Male 18.6
Sample D Male 20.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 29.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 29.9
Samples: 4

Max nTPM: 31.7
Min nTPM: 28.2
Sample A Male 28.2
Sample B Male 29.8
Sample C Female 31.7
Sample D Female 29.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.4
69526498 Antisense, RP_050421_01_A01, Mouse strain C57BL/6J (56 days, male) 0.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.