We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.
Gene namei
Official gene symbol, which is typically a short form of the gene name, according to HGNC.
Cancer-related genes CD markers Disease related genes Enzymes FDA approved drug targets Human disease related genes Plasma proteins RAS pathway related proteins
Predicted locationi
All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.
Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.
Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).
The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.
Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.
Chromosome
5
Cytoband
q32
Chromosome location (bp)
150053291 - 150113372
Number of transcriptsi
Number of protein-coding transcripts from the gene as defined by Ensembl.
The Structure section provides predicted structures from the Alphafold protein structure database and available experimental structures from Protein Data Bank (PDB).
In the Structure drop-down menu all experimental structures from PDB are available for selection and display. The structures are displayed using the NGL Viewer and can be zoomed-in and rotated either manually or by checking the Autorotate box. The Color scheme can be selected to show the residue index, chain name or confidence score (as B-factors and pLDDT score for experimental and predicted structures, respectively). The positions for available antigen sequences in the structure are shown if Antigens is turned to ON, and the Variants slider can be used to show the positions of clinical and population variants.https://github.com/nglviewer/ngl
The protein browser displays the antigen location on the target protein(s) and the features of the target protein. The tabs at the top of the protein view section can be used to switch between the different splice variants to which an antigen has been mapped.
At the top of the view, the position of the antigen (identified by the corresponding HPA identifier) is shown as a green bar. A yellow triangle on the bar indicates a <100% sequence identity to the protein target.
Below the antigens, the maximum percent sequence identity of the protein to all other proteins from other human genes is displayed, using a sliding window of 10 aa residues (HsID 10) or 50 aa residues (HsID 50). The region with the lowest possible identity is always selected for antigen design, with a maximum identity of 60% allowed for designing a single-target antigen (read more).
The curve in blue displays the predicted antigenicity i.e. the tendency for different regions of the protein to generate an immune response, with peak regions being predicted to be more antigenic.The curve shows average values based on a sliding window approach using an in-house propensity scale. (read more).
If a signal peptide is predicted by a majority of the signal peptide predictors SPOCTOPUS, SignalP 4.0, and Phobius (turquoise) and/or transmembrane regions (orange) are predicted by MDM, these are displayed.
Low complexity regions are shown in yellow and InterPro regions in green. Common (purple) and unique (grey) regions between different splice variants of the gene are also displayed (read more), and at the bottom of the protein view is the protein scale.
CSF1R-201
CSF1R-205
CSF1R-209
CSF1R-210
PROTEIN INFORMATIONi
The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.
The ENSP identifier links to the Ensembl website protein summary, while the ENST identifier links to the Ensembl website transcript summary for the selected splice variant. The data in the UniProt column can be expanded to show links to all matching UniProt identifiers for this protein.
The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.
The Gene Ontology terms assigned to this protein are listed if expanding the Gene ontology column. The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide (according to a majority of the signal peptide predictors SPOCTOPUS, SignalP 4.0, and Phobius) and the number of predicted transmembrane region(s) (according to MDM) are also reported.
Enzymes ENZYME proteins Transferases Kinases Tyr protein kinases CD markers Predicted membrane proteins Prediction method-based Membrane proteins predicted by MDM MEMSAT3 predicted membrane proteins MEMSAT-SVM predicted membrane proteins Phobius predicted membrane proteins SCAMPI predicted membrane proteins SPOCTOPUS predicted membrane proteins THUMBUP predicted membrane proteins TMHMM predicted membrane proteins # TM segments-based 1TM proteins predicted by MDM Plasma proteins RAS pathway related proteins Cancer-related genes Candidate cancer biomarkers Disease related genes FDA approved drug targets Small molecule drugs Human disease related genes Cancers Cancers of the breast and female genital organs Nervous system diseases Neurodegenerative diseases Mapped to neXtProt neXtProt - Evidence at protein level Protein evidence (Kim et al 2014) Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000166 [nucleotide binding] GO:0001934 [positive regulation of protein phosphorylation] GO:0002244 [hematopoietic progenitor cell differentiation] GO:0002376 [immune system process] GO:0002931 [response to ischemia] GO:0004672 [protein kinase activity] GO:0004713 [protein tyrosine kinase activity] GO:0004714 [transmembrane receptor protein tyrosine kinase activity] GO:0005011 [macrophage colony-stimulating factor receptor activity] GO:0005515 [protein binding] GO:0005524 [ATP binding] GO:0005654 [nucleoplasm] GO:0005886 [plasma membrane] GO:0005887 [integral component of plasma membrane] GO:0006468 [protein phosphorylation] GO:0006954 [inflammatory response] GO:0007165 [signal transduction] GO:0007169 [transmembrane receptor protein tyrosine kinase signaling pathway] GO:0007275 [multicellular organism development] GO:0007411 [axon guidance] GO:0008283 [cell population proliferation] GO:0008284 [positive regulation of cell population proliferation] GO:0008285 [negative regulation of cell population proliferation] GO:0008360 [regulation of cell shape] GO:0009986 [cell surface] GO:0010759 [positive regulation of macrophage chemotaxis] GO:0016020 [membrane] GO:0016021 [integral component of membrane] GO:0016301 [kinase activity] GO:0016310 [phosphorylation] GO:0016740 [transferase activity] GO:0018108 [peptidyl-tyrosine phosphorylation] GO:0019221 [cytokine-mediated signaling pathway] GO:0019903 [protein phosphatase binding] GO:0019955 [cytokine binding] GO:0021772 [olfactory bulb development] GO:0021879 [forebrain neuron differentiation] GO:0030097 [hemopoiesis] GO:0030224 [monocyte differentiation] GO:0030225 [macrophage differentiation] GO:0030316 [osteoclast differentiation] GO:0030335 [positive regulation of cell migration] GO:0031529 [ruffle organization] GO:0032722 [positive regulation of chemokine production] GO:0033674 [positive regulation of kinase activity] GO:0036006 [cellular response to macrophage colony-stimulating factor stimulus] GO:0038145 [macrophage colony-stimulating factor signaling pathway] GO:0042531 [positive regulation of tyrosine phosphorylation of STAT protein] GO:0042803 [protein homodimerization activity] GO:0043066 [negative regulation of apoptotic process] GO:0043231 [intracellular membrane-bounded organelle] GO:0043235 [receptor complex] GO:0044794 [positive regulation by host of viral process] GO:0045087 [innate immune response] GO:0045124 [regulation of bone resorption] GO:0045217 [cell-cell junction maintenance] GO:0046488 [phosphatidylinositol metabolic process] GO:0046777 [protein autophosphorylation] GO:0048015 [phosphatidylinositol-mediated signaling] GO:0060603 [mammary gland duct morphogenesis] GO:0061098 [positive regulation of protein tyrosine kinase activity] GO:0061518 [microglial cell proliferation] GO:0070374 [positive regulation of ERK1 and ERK2 cascade] GO:0071345 [cellular response to cytokine stimulus] GO:0071902 [positive regulation of protein serine/threonine kinase activity] GO:0120041 [positive regulation of macrophage proliferation] GO:1990682 [CSF1-CSF1R complex] GO:2000147 [positive regulation of cell motility] GO:2000249 [regulation of actin cytoskeleton reorganization]
Predicted intracellular proteins Intracellular proteins predicted by MDM and MDSEC RAS pathway related proteins Human disease related genes Cancers Cancers of the breast and female genital organs Nervous system diseases Neurodegenerative diseases Protein evidence (Ezkurdia et al 2014)
Enzymes ENZYME proteins Transferases Kinases Tyr protein kinases CD markers Secreted proteins predicted by MDSEC SignalP predicted secreted proteins Phobius predicted secreted proteins SPOCTOPUS predicted secreted proteins Predicted intracellular proteins Plasma proteins RAS pathway related proteins Cancer-related genes Candidate cancer biomarkers Disease related genes FDA approved drug targets Small molecule drugs Human disease related genes Cancers Cancers of the breast and female genital organs Nervous system diseases Neurodegenerative diseases Mapped to neXtProt neXtProt - Evidence at protein level Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000166 [nucleotide binding] GO:0001934 [positive regulation of protein phosphorylation] GO:0002244 [hematopoietic progenitor cell differentiation] GO:0002376 [immune system process] GO:0002931 [response to ischemia] GO:0004672 [protein kinase activity] GO:0004713 [protein tyrosine kinase activity] GO:0004714 [transmembrane receptor protein tyrosine kinase activity] GO:0005011 [macrophage colony-stimulating factor receptor activity] GO:0005515 [protein binding] GO:0005524 [ATP binding] GO:0005654 [nucleoplasm] GO:0005886 [plasma membrane] GO:0005887 [integral component of plasma membrane] GO:0006468 [protein phosphorylation] GO:0006954 [inflammatory response] GO:0007165 [signal transduction] GO:0007169 [transmembrane receptor protein tyrosine kinase signaling pathway] GO:0007275 [multicellular organism development] GO:0008283 [cell population proliferation] GO:0008284 [positive regulation of cell population proliferation] GO:0008360 [regulation of cell shape] GO:0009986 [cell surface] GO:0010759 [positive regulation of macrophage chemotaxis] GO:0016020 [membrane] GO:0016021 [integral component of membrane] GO:0016301 [kinase activity] GO:0016310 [phosphorylation] GO:0016740 [transferase activity] GO:0018108 [peptidyl-tyrosine phosphorylation] GO:0019221 [cytokine-mediated signaling pathway] GO:0019955 [cytokine binding] GO:0030097 [hemopoiesis] GO:0030224 [monocyte differentiation] GO:0030225 [macrophage differentiation] GO:0030316 [osteoclast differentiation] GO:0030335 [positive regulation of cell migration] GO:0031529 [ruffle organization] GO:0032722 [positive regulation of chemokine production] GO:0033674 [positive regulation of kinase activity] GO:0036006 [cellular response to macrophage colony-stimulating factor stimulus] GO:0038145 [macrophage colony-stimulating factor signaling pathway] GO:0042531 [positive regulation of tyrosine phosphorylation of STAT protein] GO:0042803 [protein homodimerization activity] GO:0043231 [intracellular membrane-bounded organelle] GO:0043235 [receptor complex] GO:0045087 [innate immune response] GO:0045124 [regulation of bone resorption] GO:0045217 [cell-cell junction maintenance] GO:0046488 [phosphatidylinositol metabolic process] GO:0046777 [protein autophosphorylation] GO:0048015 [phosphatidylinositol-mediated signaling] GO:0060603 [mammary gland duct morphogenesis] GO:0061098 [positive regulation of protein tyrosine kinase activity] GO:0070374 [positive regulation of ERK1 and ERK2 cascade] GO:0071345 [cellular response to cytokine stimulus] GO:0071902 [positive regulation of protein serine/threonine kinase activity] GO:0120041 [positive regulation of macrophage proliferation] GO:1990682 [CSF1-CSF1R complex] GO:2000147 [positive regulation of cell motility] GO:2000249 [regulation of actin cytoskeleton reorganization]
The Human Protein Atlas project is funded
