HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:17.4 nTPM
HPA:17.4 nTPM
GTEx:25.6 nTPM
FANTOM5:100.9 Scaled Tags Per Million
Pig:80.7 nTPM
Mouse:66.3 nTPM
Allen mouse:13.9 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA034743Antibody HPA057910Antibody CAB004275Antibody CAB005334
Glial cells Not detectedNot detectedNot detectedNot detected
Neuronal cells MediumMediumHighHigh








HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 17.4
Sample id Sample description nTPM
Hippocampus
nTPM: 6.9
1911 Female, age 85, right hemisphere 20.4
2148 Female, age 91, left hemisphere 8.0
1898 Male, age 80, left hemisphere 7.8
2621 Female, age 67, right hemisphere 3.7
1855 Male, age 76, left hemisphere 1.3
2529 Female, age 94, left hemisphere 0.0
Dentate gyrus
nTPM: 3.9
1927 Female, age 91, both hemispheres 17.0
2531 Female, age 67, both hemispheres 5.5
2246 Female, age 85, both hemispheres 1.3
2010 Male, age 76, both hemispheres 0.0
2528 Male, age 74, both hemispheres 0.0
2530 Female, age 94, left hemisphere 0.0
Entorhinal gyrus
nTPM: 6.1
2613 Female, age 94, left hemisphere 14.7
1787 Male, age 76, left hemisphere 12.3
1938 Female, age 85, left hemisphere 8.2
2686 Male, age 75, right hemisphere 1.6
2117 Female, age 91, right hemisphere 0.0
2764 Male, age 80, right hemisphere 0.0
Hippocampus, CA1
nTPM: 16.9
2749 Male, age 80, left hemisphere 59.3
2045 Male, age 76, both hemispheres 10.9
2527 Male, age 74, both hemispheres 9.7
1873 Female, age 85, both hemispheres 4.9
2082 Female, age 91, right hemisphere 0.0
Hippocampus, CA2
nTPM: 5.5
1892 Male, age 76, both hemispheres 15.8
1963 Male, age 80, left hemisphere 6.8
1940 Female, age 85, left hemisphere 6.1
2437 Female, age 94, left hemisphere 4.7
2113 Female, age 91, right hemisphere 0.0
2249 Male, age 74, both hemispheres 0.0
Hippocampus, CA3
nTPM: 17.4
2137 Male, age 80, left hemisphere 50.4
2620 Female, age 94, left hemisphere 37.0
1891 Female, age 85, both hemispheres 7.4
2861 Female, age 67, both hemispheres 5.3
1867 Male, age 76, both hemispheres 4.2
2436 Male, age 74, both hemispheres 0.0
Parahippocampal cortex
nTPM: 6.3
2532 Female, age 72, left hemisphere 16.3
2245 Female, age 91, both hemispheres 14.0
1990 Female, age 91, right hemisphere 9.8
2693 Female, age 94, both hemispheres 9.0
2622 Female, age 67, right hemisphere 6.6
2250 Female, age 67, right hemisphere 6.5
1850 Male, age 80, both hemispheres 0.6
1933 Female, age 85, both hemispheres 0.0
2018 Male, age 76, both hemispheres 0.0
2692 Male, age 74, both hemispheres 0.0
Perirhinal gyrus
nTPM: 11.8
1841 Female, age 85, right hemisphere 21.3
2521 Female, age 94, right hemisphere 17.1
1794 Male, age 80, right hemisphere 10.6
1847 Female, age 91, left hemisphere 7.9
2848 Male, age 76, right hemisphere 2.2
Subiculum
nTPM: 6.0
2438 Female, age 94, left hemisphere 27.8
1901 Male, age 80, both hemispheres 5.6
2729 Female, age 91, right hemisphere 3.1
1977 Female, age 85, both hemispheres 0.0
2042 Male, age 76, both hemispheres 0.0
2619 Male, age 74, both hemispheres 0.0

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 25.6
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 25.6
Samples: 197

Max nTPM: 83.0
Min nTPM: 3.5
Std nTPM: 14.3
Median nTPM: 23.5
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 83.0
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 78.9
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 74.1
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 62.4
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 62.3
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 58.6
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 55.9
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 53.4
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 52.0
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 49.4
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 48.9
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 100.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 100.9
FF:10169-103B7 60 years, female 127.6
FF:10153-102I9 76 years, female 74.2

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 80.7
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 63.9
Samples: 4

Max nTPM: 74.3
Min nTPM: 55.2
Sample A Female 74.3
Sample B Female 68.8
Sample C Male 57.4
Sample D Male 55.2
Entorhinal cortex
nTPM: 80.7
Samples: 4

Max nTPM: 85.0
Min nTPM: 74.1
Sample A Female 85.0
Sample B Female 84.1
Sample C Male 74.1
Sample D Male 79.6
Subiculum
nTPM: 38.5
Samples: 4

Max nTPM: 46.8
Min nTPM: 30.4
Sample A Female 46.8
Sample B Female 31.8
Sample C Male 30.4
Sample D Male 44.9
Ventral hippocampus
nTPM: 51.8
Samples: 4

Max nTPM: 73.1
Min nTPM: 36.6
Sample A Female 55.8
Sample B Female 36.6
Sample C Male 41.8
Sample D Male 73.1

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 66.3
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 66.3
Samples: 4

Max nTPM: 71.7
Min nTPM: 55.1
Sample A Male 67.8
Sample B Male 71.7
Sample C Female 55.1
Sample D Female 70.7
Hippocampal formation
nTPM: 59.3
Samples: 4

Max nTPM: 69.0
Min nTPM: 49.3
Sample A Male 52.4
Sample B Male 66.5
Sample C Female 69.0
Sample D Female 49.3

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 13.9
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 13.9
69783292 Antisense, RP_050505_04_G02, Mouse strain C57BL/6J (56 days, male) 14.6
75084969 Antisense, RP_060412_04_C12, Mouse strain C57BL/6J (56 days, male) 13.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
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