MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:43.8 nTPM
HPA:43.8 nTPM
GTEx:44.9 nTPM
FANTOM5:4.2 Scaled Tags Per Million
Mouse:85.7 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 43.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 42.4
2586 Male, age 75, left hemisphere 51.0
2666 Male, age 74, left hemisphere 46.6
1827 Male, age 72, unknown 44.1
2411 Female, age 72, unknown 41.8
1830 Male, age 51, unknown 40.8
1870 Female, age 42, unknown 40.8
2019 Male, age 18, unknown 40.4
1833 Male, age 53, unknown 40.2
2828 Female, age 72, unknown 40.2
2219 Male, age 76, both hemispheres 38.0
Dorsal raphe nucleus
nTPM: 39.6
2047 Male, age 72, unknown 41.7
1828 Male, age 53, unknown 40.5
2016 Female, age 72, unknown 40.5
2750 Male, age 76, both hemispheres 37.8
2298 Female, age 72, unknown 37.4
Inferior colliculus
nTPM: 42.2
1848 Female, age 42, unknown 43.2
1890 Male, age 53, unknown 42.8
2849 Male, age 72, unknown 41.5
2097 Female, age 72, unknown 41.2
Median raphe nucleus
nTPM: 38.5
2220 Male, age 76, midline 38.5
Pedunculopontine tegmental nucleus
nTPM: 37.7
1921 Female, age 85, both hemispheres 40.5
2334 Male, age 80, both hemispheres 39.1
2338 Male, age 61, both hemispheres 33.5
Periaquaductal grey, anterior
nTPM: 43.8
2502 Female, age 75, unknown 46.8
1947 Male, age 18, unknown 44.8
1795 Male, age 51, unknown 39.8
Periaquaductal grey, dorsal
nTPM: 41.1
1840 Male, age 53, unknown 44.4
2464 Female, age 72, unknown 42.9
1831 Male, age 72, unknown 40.1
2850 Male, age 76, both hemispheres 37.0
Periaquaductal grey, lateral
nTPM: 37.3
2053 Male, age 18, unknown 40.4
2140 Male, age 76, both hemispheres 37.2
2272 Male, age 74, both hemispheres 34.3
Pretectal area
nTPM: 40.7
1816 Male, age 51, unknown 44.4
2007 Male, age 72, unknown 43.6
1944 Female, age 72, unknown 43.4
2407 Male, age 75, both hemispheres 42.5
1815 Male, age 53, unknown 42.0
1817 Female, age 42, unknown 41.9
2825 Male, age 18, unknown 40.6
2224 Female, age 72, unknown 38.5
2316 Male, age 76, right hemisphere 37.9
2273 Male, age 74, both hemispheres 36.5
2667 Female, age 75, unknown 36.1
Red nucleus
nTPM: 41.6
2584 Male, age 75, left hemisphere 46.2
2588 Male, age 74, left hemisphere 44.5
2503 Female, age 72, unknown 44.0
1821 Female, age 72, unknown 43.5
1954 Female, age 42, unknown 41.4
2785 Male, age 18, unknown 41.1
2725 Female, age 75, unknown 40.3
1904 Male, age 53, unknown 40.2
1865 Male, age 51, unknown 40.0
2227 Male, age 72, unknown 40.0
2769 Male, age 72, unknown 39.4
2823 Male, age 76, right hemisphere 38.0
Substantia nigra
nTPM: 41.6
2241 Male, age 72, unknown 44.2
2665 Male, age 74, both hemispheres 44.1
1889 Female, age 72, unknown 42.9
2583 Male, age 75, right hemisphere 42.9
1941 Male, age 53, unknown 42.8
1851 Male, age 51, unknown 40.7
2590 Female, age 75, unknown 40.7
1916 Female, age 42, unknown 40.1
2699 Male, age 18, unknown 39.3
2409 Female, age 72, unknown 37.8
Superior colliculus
nTPM: 41.8
2664 Male, age 75, both hemispheres 48.9
2668 Female, age 75, unknown 46.4
1839 Male, age 51, unknown 42.7
2587 Male, age 74, left hemisphere 41.8
2261 Male, age 18, unknown 41.2
1895 Male, age 76, right hemisphere 40.9
2087 Female, age 72, unknown 40.9
1796 Male, age 53, unknown 39.7
1913 Female, age 42, unknown 38.5
1995 Male, age 72, unknown 37.4
Ventral tegmental area
nTPM: 39.4
1942 Male, age 51, unknown 41.8
2410 Female, age 72, unknown 40.6
1915 Female, age 42, unknown 40.2
2223 Female, age 72, unknown 38.5
2218 Male, age 76, both hemispheres 38.4
2021 Male, age 53, unknown 37.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 44.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 44.9
Samples: 139

Max nTPM: 85.9
Min nTPM: 19.7
Std nTPM: 13.4
Median nTPM: 41.8
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 85.9
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 83.1
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 82.7
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 80.6
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 76.1
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 74.5
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 73.5
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 73.1
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 71.5
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 69.8
GTEX-1I1CD-0011-R2a-SM-CM2T3 60-69 years, female 68.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 4.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 4.2
FF:10158-103A5 76 years, female 4.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 85.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 85.7
Samples: 4

Max nTPM: 93.7
Min nTPM: 70.6
Sample A Male 70.6
Sample B Male 93.7
Sample C Female 92.2
Sample D Female 86.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
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