MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:550.3 nTPM
HPA:550.3 nTPM
GTEx:680.9 nTPM
FANTOM5:71.4 Scaled Tags Per Million
Pig:46.6 nTPM
Mouse:873.7 nTPM
Allen mouse:4.5 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 550.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 538.1
1870 Female, age 42, unknown 554.0
2828 Female, age 72, unknown 542.0
2666 Male, age 74, left hemisphere 540.0
2586 Male, age 75, left hemisphere 539.5
1827 Male, age 72, unknown 538.8
2411 Female, age 72, unknown 537.4
1833 Male, age 53, unknown 534.1
2019 Male, age 18, unknown 532.7
2219 Male, age 76, both hemispheres 531.6
1830 Male, age 51, unknown 530.9
Dorsal raphe nucleus
nTPM: 544.4
2298 Female, age 72, unknown 558.8
2016 Female, age 72, unknown 544.5
1828 Male, age 53, unknown 542.4
2750 Male, age 76, both hemispheres 538.4
2047 Male, age 72, unknown 537.8
Inferior colliculus
nTPM: 544.3
2097 Female, age 72, unknown 551.3
1890 Male, age 53, unknown 549.2
2849 Male, age 72, unknown 540.0
1848 Female, age 42, unknown 536.8
Median raphe nucleus
nTPM: 541.4
2220 Male, age 76, midline 541.4
Pedunculopontine tegmental nucleus
nTPM: 544.5
2338 Male, age 61, both hemispheres 551.2
2334 Male, age 80, both hemispheres 545.2
1921 Female, age 85, both hemispheres 537.1
Periaquaductal grey, anterior
nTPM: 545.0
2502 Female, age 75, unknown 549.6
1947 Male, age 18, unknown 544.1
1795 Male, age 51, unknown 541.2
Periaquaductal grey, dorsal
nTPM: 539.7
1840 Male, age 53, unknown 548.9
2850 Male, age 76, both hemispheres 544.3
1831 Male, age 72, unknown 537.7
2464 Female, age 72, unknown 528.0
Periaquaductal grey, lateral
nTPM: 535.1
2053 Male, age 18, unknown 544.3
2140 Male, age 76, both hemispheres 535.0
2272 Male, age 74, both hemispheres 526.0
Pretectal area
nTPM: 540.8
1817 Female, age 42, unknown 546.8
1944 Female, age 72, unknown 545.9
2224 Female, age 72, unknown 545.4
2007 Male, age 72, unknown 544.2
2316 Male, age 76, right hemisphere 543.2
1816 Male, age 51, unknown 542.5
1815 Male, age 53, unknown 541.2
2667 Female, age 75, unknown 540.7
2825 Male, age 18, unknown 539.9
2407 Male, age 75, both hemispheres 530.5
2273 Male, age 74, both hemispheres 528.2
Red nucleus
nTPM: 546.8
2503 Female, age 72, unknown 562.1
1821 Female, age 72, unknown 555.9
1865 Male, age 51, unknown 553.9
2725 Female, age 75, unknown 552.1
2227 Male, age 72, unknown 547.7
1904 Male, age 53, unknown 544.8
2584 Male, age 75, left hemisphere 543.8
2769 Male, age 72, unknown 542.8
1954 Female, age 42, unknown 541.5
2823 Male, age 76, right hemisphere 540.4
2785 Male, age 18, unknown 539.3
2588 Male, age 74, left hemisphere 537.8
Substantia nigra
nTPM: 550.3
1851 Male, age 51, unknown 567.9
2699 Male, age 18, unknown 560.1
2665 Male, age 74, both hemispheres 555.4
2241 Male, age 72, unknown 554.5
1916 Female, age 42, unknown 554.2
2409 Female, age 72, unknown 553.4
1889 Female, age 72, unknown 552.1
2590 Female, age 75, unknown 539.7
1941 Male, age 53, unknown 538.0
2583 Male, age 75, right hemisphere 527.8
Superior colliculus
nTPM: 543.5
2587 Male, age 74, left hemisphere 560.5
1913 Female, age 42, unknown 548.7
1995 Male, age 72, unknown 548.4
1796 Male, age 53, unknown 545.0
1895 Male, age 76, right hemisphere 544.0
2668 Female, age 75, unknown 542.7
2087 Female, age 72, unknown 539.0
2261 Male, age 18, unknown 538.2
1839 Male, age 51, unknown 536.7
2664 Male, age 75, both hemispheres 531.8
Ventral tegmental area
nTPM: 546.7
1915 Female, age 42, unknown 559.2
2223 Female, age 72, unknown 555.0
2021 Male, age 53, unknown 548.0
1942 Male, age 51, unknown 540.7
2410 Female, age 72, unknown 540.3
2218 Male, age 76, both hemispheres 537.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 680.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 680.9
Samples: 139

Max nTPM: 2017.3
Min nTPM: 271.9
Std nTPM: 255.8
Median nTPM: 625.0
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 2017.3
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 1680.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 1542.5
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 1328.9
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 1300.3
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 1236.7
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 1110.3
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 1059.9
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 1040.9
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 1028.6
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 1012.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 71.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 71.4
FF:10158-103A5 76 years, female 71.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 46.6
Pig sample Sample description nTPM
Midbrain
nTPM: 40.1
Samples: 4

Max nTPM: 59.0
Min nTPM: 24.1
Sample A Female 59.0
Sample B Female 39.7
Sample C Male 37.5
Sample D Male 24.1
Periaqueductal gray
nTPM: 30.3
Samples: 3

Max nTPM: 35.1
Min nTPM: 23.1
Sample B Female 32.6
Sample C Male 35.1
Sample D Male 23.1
Substantia nigra
nTPM: 41.6
Samples: 4

Max nTPM: 52.4
Min nTPM: 31.9
Sample A Female 52.4
Sample B Female 49.9
Sample C Male 32.1
Sample D Male 31.9
Superior colliculi
nTPM: 46.6
Samples: 4

Max nTPM: 59.2
Min nTPM: 32.8
Sample A Female 52.7
Sample B Female 59.2
Sample C Male 41.8
Sample D Male 32.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 873.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 873.8
Samples: 4

Max nTPM: 967.4
Min nTPM: 768.4
Sample A Male 967.4
Sample B Male 847.2
Sample C Female 768.4
Sample D Female 912.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.5
68637784 Antisense, RP_050126_01_F03, Mouse strain C57BL/6J (56 days, male) 4.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.