MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:129.2 nTPM
HPA:129.2 nTPM
GTEx:107.6 nTPM
FANTOM5:126.7 Scaled Tags Per Million
Mouse:101.7 nTPM
Allen mouse:0.2 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 129.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 120.1
2828 Female, age 72, unknown 142.3
2586 Male, age 75, left hemisphere 133.7
2666 Male, age 74, left hemisphere 120.9
1827 Male, age 72, unknown 120.4
1870 Female, age 42, unknown 119.3
2411 Female, age 72, unknown 117.2
1833 Male, age 53, unknown 115.8
1830 Male, age 51, unknown 114.0
2219 Male, age 76, both hemispheres 110.6
2019 Male, age 18, unknown 107.3
Dorsal raphe nucleus
nTPM: 120.8
2047 Male, age 72, unknown 128.1
1828 Male, age 53, unknown 124.9
2016 Female, age 72, unknown 122.2
2298 Female, age 72, unknown 115.5
2750 Male, age 76, both hemispheres 113.1
Inferior colliculus
nTPM: 127.0
1848 Female, age 42, unknown 132.3
1890 Male, age 53, unknown 127.5
2097 Female, age 72, unknown 124.8
2849 Male, age 72, unknown 123.5
Median raphe nucleus
nTPM: 106.8
2220 Male, age 76, midline 106.8
Pedunculopontine tegmental nucleus
nTPM: 108.1
1921 Female, age 85, both hemispheres 115.6
2334 Male, age 80, both hemispheres 112.5
2338 Male, age 61, both hemispheres 96.2
Periaquaductal grey, anterior
nTPM: 121.8
1947 Male, age 18, unknown 126.7
1795 Male, age 51, unknown 121.5
2502 Female, age 75, unknown 117.3
Periaquaductal grey, dorsal
nTPM: 120.0
2464 Female, age 72, unknown 126.9
1840 Male, age 53, unknown 121.4
2850 Male, age 76, both hemispheres 116.3
1831 Male, age 72, unknown 115.2
Periaquaductal grey, lateral
nTPM: 119.0
2053 Male, age 18, unknown 128.9
2140 Male, age 76, both hemispheres 122.7
2272 Male, age 74, both hemispheres 105.5
Pretectal area
nTPM: 119.2
1817 Female, age 42, unknown 128.5
2825 Male, age 18, unknown 127.4
2667 Female, age 75, unknown 125.6
2316 Male, age 76, right hemisphere 123.7
1944 Female, age 72, unknown 122.3
1815 Male, age 53, unknown 121.0
1816 Male, age 51, unknown 120.5
2224 Female, age 72, unknown 114.8
2007 Male, age 72, unknown 111.8
2407 Male, age 75, both hemispheres 107.8
2273 Male, age 74, both hemispheres 107.3
Red nucleus
nTPM: 129.2
2503 Female, age 72, unknown 139.2
1954 Female, age 42, unknown 138.8
2588 Male, age 74, left hemisphere 136.0
1821 Female, age 72, unknown 135.2
2227 Male, age 72, unknown 133.7
2769 Male, age 72, unknown 133.2
2823 Male, age 76, right hemisphere 131.9
1865 Male, age 51, unknown 127.7
1904 Male, age 53, unknown 126.9
2725 Female, age 75, unknown 126.3
2584 Male, age 75, left hemisphere 113.7
2785 Male, age 18, unknown 107.6
Substantia nigra
nTPM: 123.2
2699 Male, age 18, unknown 137.6
1916 Female, age 42, unknown 130.0
1851 Male, age 51, unknown 125.5
1889 Female, age 72, unknown 123.2
2241 Male, age 72, unknown 121.9
2409 Female, age 72, unknown 121.1
2665 Male, age 74, both hemispheres 121.0
2583 Male, age 75, right hemisphere 118.8
2590 Female, age 75, unknown 116.7
1941 Male, age 53, unknown 116.5
Superior colliculus
nTPM: 120.2
2668 Female, age 75, unknown 125.7
2087 Female, age 72, unknown 124.4
2664 Male, age 75, both hemispheres 123.6
1796 Male, age 53, unknown 121.2
2261 Male, age 18, unknown 121.1
1995 Male, age 72, unknown 119.4
1839 Male, age 51, unknown 119.1
1895 Male, age 76, right hemisphere 118.9
1913 Female, age 42, unknown 114.2
2587 Male, age 74, left hemisphere 113.7
Ventral tegmental area
nTPM: 117.5
2410 Female, age 72, unknown 124.2
1915 Female, age 42, unknown 121.6
1942 Male, age 51, unknown 119.5
2021 Male, age 53, unknown 117.7
2223 Female, age 72, unknown 111.8
2218 Male, age 76, both hemispheres 110.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 107.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 107.6
Samples: 139

Max nTPM: 247.6
Min nTPM: 17.5
Std nTPM: 46.9
Median nTPM: 101.7
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 247.6
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 238.2
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 230.0
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 227.4
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 206.7
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 192.1
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 187.7
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 184.2
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 179.4
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 175.2
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 174.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 126.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 126.7
FF:10158-103A5 76 years, female 126.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 101.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 101.7
Samples: 4

Max nTPM: 117.1
Min nTPM: 92.9
Sample A Male 117.1
Sample B Male 93.7
Sample C Female 92.9
Sample D Female 103.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
71210908 Antisense, RP_050810_04_G08, Mouse strain C57BL/6J (56 days, male) 0.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
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