BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:132.1 nTPM
HPA:132.1 nTPM
GTEx:123.8 nTPM
FANTOM5:89.5 Scaled Tags Per Million
Mouse:90.2 nTPM
Allen mouse:0.1 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 132.1
Sample id Sample description nTPM
Caudate nucleus
nTPM: 121.8
2481 Female, age 94, left hemisphere 138.4
1854 Male, age 80, left hemisphere 127.9
2289 Male, age 61, right hemisphere 127.3
2288 Male, age 75, left hemisphere 123.7
1857 Female, age 85, left hemisphere 122.3
2290 Female, age 72, unknown 115.6
1781 Male, age 74, unknown 110.0
2846 Female, age 79, unknown 109.3
Claustrum
nTPM: 104.8
2645 Female, age 72, unknown 111.2
2568 Male, age 61, both hemispheres 109.2
2491 Male, age 75, both hemispheres 108.4
2198 Male, age 80, both hemispheres 107.8
2284 Female, age 91, both hemispheres 104.8
2392 Female, age 94, both hemispheres 103.3
2196 Female, age 79, unknown 102.2
1956 Male, age 74, unknown 101.4
2292 Female, age 85, both hemispheres 94.7
Globus pallidus, externus
nTPM: 132.1
2646 Male, age 61, right hemisphere 163.5
1996 Male, age 80, right hemisphere 139.4
2567 Female, age 72, unknown 130.1
2772 Female, age 79, unknown 118.6
2395 Male, age 75, both hemispheres 108.8
Globus pallidus, internus
nTPM: 127.8
2037 Male, age 80, right hemisphere 134.4
1818 Male, age 74, unknown 134.3
2483 Female, age 94, right hemisphere 134.1
2287 Male, age 75, right hemisphere 128.9
2111 Female, age 85, right hemisphere 123.7
2566 Female, age 72, unknown 121.0
2778 Female, age 91, both hemispheres 118.1
Nucleus accumbens
nTPM: 114.1
2286 Male, age 75, left hemisphere 127.1
2391 Female, age 94, left hemisphere 117.4
1806 Female, age 85, left hemisphere 115.4
2824 Male, age 61, right hemisphere 113.9
2732 Male, age 80, right hemisphere 113.0
1783 Male, age 74, unknown 111.3
1856 Female, age 91, right hemisphere 108.3
2698 Female, age 72, unknown 106.7
Nucleus basalis of Meynert
nTPM: 125.1
2569 Male, age 61, both hemispheres 170.8
2393 Male, age 80, right hemisphere 113.1
2484 Female, age 94, left hemisphere 113.1
2821 Male, age 75, both hemispheres 103.5
Nucleus of the diagonal band
nTPM: 111.1
1979 Male, age 74, unknown 115.4
2775 Male, age 80, right hemisphere 114.6
2195 Female, age 85, both hemispheres 110.7
1812 Female, age 91, both hemispheres 108.5
2029 Male, age 61, right hemisphere 106.1
Olfactory tubercle
nTPM: 113.4
2856 Male, age 75, right hemisphere 123.4
1846 Male, age 80, right hemisphere 119.5
2487 Female, age 94, left hemisphere 105.7
1998 Female, age 91, both hemispheres 104.8
Putamen
nTPM: 117.7
2647 Male, age 75, left hemisphere 131.4
2482 Female, age 94, left hemisphere 124.8
2489 Female, age 72, unknown 123.7
1838 Male, age 80, right hemisphere 114.1
1829 Male, age 74, unknown 112.3
2466 Female, age 79, unknown 111.2
1937 Female, age 91, right hemisphere 106.2
Septal nuclei
nTPM: 112.0
2059 Female, age 85, both hemispheres 128.4
2199 Male, age 80, right hemisphere 116.7
1960 Male, age 74, unknown 113.7
2394 Male, age 61, left hemisphere 108.6
2031 Female, age 72, unknown 105.8
2629 Female, age 94, right hemisphere 105.8
2009 Female, age 91, both hemispheres 104.8

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 123.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 116.5
Samples: 246

Max nTPM: 313.9
Min nTPM: 21.6
Std nTPM: 52.4
Median nTPM: 104.0
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 313.9
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 273.2
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 256.8
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 252.5
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 252.3
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 250.5
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 248.5
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 246.1
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 243.6
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 236.3
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 227.6
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 97.3
Samples: 246

Max nTPM: 329.9
Min nTPM: 20.1
Std nTPM: 47.5
Median nTPM: 88.5
GTEX-13JVG-0011-R6a-SM-5MR3E 60-69 years, male 329.9
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 326.5
GTEX-1LB8K-0011-R6a-SM-EXURT 50-59 years, male 246.5
GTEX-1F75B-0011-R6a-SM-ARZMI 50-59 years, male 212.6
GTEX-1E2YA-0011-R6b-SM-CE6R2 50-59 years, male 209.2
GTEX-1R46S-0011-R6a-SM-EZ6N6 60-69 years, female 208.9
GTEX-1A8G6-0011-R6b-SM-7P8PE 60-69 years, male 205.6
GTEX-1445S-0011-R6b-SM-5PNUF 60-69 years, male 204.8
GTEX-1H23P-0011-R6b-SM-A9G1H 60-69 years, male 202.0
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 198.2
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 190.6
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Brain - Putamen (basal ganglia)
Average nTPM: 123.8
Samples: 205

Max nTPM: 310.2
Min nTPM: 17.9
Std nTPM: 58.2
Median nTPM: 112.7
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 310.2
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 305.6
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 303.2
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 290.8
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 281.6
GTEX-1E1VI-0011-R7b-SM-9QEGR 50-59 years, male 255.7
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 244.0
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 233.6
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 227.9
GTEX-13CZV-0011-R7b-SM-5LZXH 60-69 years, male 226.7
GTEX-1F52S-0011-R7b-SM-9QEH8 60-69 years, female 223.4
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 89.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 89.5
FF:10164-103B2 76 years, female 89.5
Globus pallidus
Scaled Tags Per Million: 68.9
FF:10161-103A8 76 years, female 78.7
FF:10175-103C4 60 years, female 59.2
Nucleus accumbens
Scaled Tags Per Million: 76.6
FF:10037-101F1 23-56 years, mixed 76.6
Putamen
Scaled Tags Per Million: 69.6
FF:10176-103C5 60 years, female 69.6

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 90.2
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 24.7
Samples: 4

Max nTPM: 27.3
Min nTPM: 20.7
Sample A Male 20.7
Sample B Male 27.3
Sample C Female 27.2
Sample D Female 23.4
Septum
nTPM: 90.2
Samples: 4

Max nTPM: 97.5
Min nTPM: 78.3
Sample A Male 91.8
Sample B Male 97.5
Sample C Female 93.2
Sample D Female 78.3
Ventral forebrain
nTPM: 62.5
Samples: 4

Max nTPM: 70.4
Min nTPM: 57.9
Sample A Male 59.3
Sample B Male 70.4
Sample C Female 62.5
Sample D Female 57.9

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.1
71210908 Antisense, RP_050810_04_G08, Mouse strain C57BL/6J (56 days, male) 0.1
Pallidum
Expression energy: 0.0
71210908 Antisense, RP_050810_04_G08, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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