MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:77.5 nTPM
HPA:77.5 nTPM
GTEx:102.2 nTPM
FANTOM5:201.6 Scaled Tags Per Million
Mouse:2.1 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 77.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 68.4
2411 Female, age 72, unknown 78.2
1870 Female, age 42, unknown 75.9
1827 Male, age 72, unknown 71.9
2219 Male, age 76, both hemispheres 71.8
1830 Male, age 51, unknown 70.2
1833 Male, age 53, unknown 69.7
2666 Male, age 74, left hemisphere 67.6
2828 Female, age 72, unknown 65.3
2019 Male, age 18, unknown 59.2
2586 Male, age 75, left hemisphere 54.2
Dorsal raphe nucleus
nTPM: 67.9
2750 Male, age 76, both hemispheres 76.1
2298 Female, age 72, unknown 68.6
2047 Male, age 72, unknown 67.2
1828 Male, age 53, unknown 67.0
2016 Female, age 72, unknown 60.5
Inferior colliculus
nTPM: 64.4
2097 Female, age 72, unknown 68.2
2849 Male, age 72, unknown 65.8
1848 Female, age 42, unknown 63.8
1890 Male, age 53, unknown 59.7
Median raphe nucleus
nTPM: 77.2
2220 Male, age 76, midline 77.2
Pedunculopontine tegmental nucleus
nTPM: 77.5
2334 Male, age 80, both hemispheres 85.3
1921 Female, age 85, both hemispheres 78.7
2338 Male, age 61, both hemispheres 68.5
Periaquaductal grey, anterior
nTPM: 74.7
1947 Male, age 18, unknown 85.9
2502 Female, age 75, unknown 70.2
1795 Male, age 51, unknown 68.1
Periaquaductal grey, dorsal
nTPM: 61.9
1831 Male, age 72, unknown 62.5
2464 Female, age 72, unknown 62.5
2850 Male, age 76, both hemispheres 61.3
1840 Male, age 53, unknown 61.2
Periaquaductal grey, lateral
nTPM: 61.2
2053 Male, age 18, unknown 67.0
2272 Male, age 74, both hemispheres 60.9
2140 Male, age 76, both hemispheres 55.7
Pretectal area
nTPM: 66.4
1815 Male, age 53, unknown 72.2
2224 Female, age 72, unknown 70.7
2825 Male, age 18, unknown 70.6
1817 Female, age 42, unknown 69.4
1944 Female, age 72, unknown 68.5
1816 Male, age 51, unknown 67.8
2007 Male, age 72, unknown 67.0
2316 Male, age 76, right hemisphere 64.8
2407 Male, age 75, both hemispheres 63.4
2273 Male, age 74, both hemispheres 61.0
2667 Female, age 75, unknown 55.0
Red nucleus
nTPM: 68.1
2725 Female, age 75, unknown 77.3
1821 Female, age 72, unknown 73.0
1954 Female, age 42, unknown 70.9
1865 Male, age 51, unknown 70.1
2503 Female, age 72, unknown 70.1
2584 Male, age 75, left hemisphere 68.0
2823 Male, age 76, right hemisphere 67.0
1904 Male, age 53, unknown 66.9
2588 Male, age 74, left hemisphere 65.8
2227 Male, age 72, unknown 65.3
2769 Male, age 72, unknown 63.8
2785 Male, age 18, unknown 59.2
Substantia nigra
nTPM: 67.6
2241 Male, age 72, unknown 78.0
1889 Female, age 72, unknown 72.3
2590 Female, age 75, unknown 70.8
2583 Male, age 75, right hemisphere 68.5
2409 Female, age 72, unknown 67.8
1941 Male, age 53, unknown 67.3
1916 Female, age 42, unknown 67.0
1851 Male, age 51, unknown 64.0
2699 Male, age 18, unknown 61.8
2665 Male, age 74, both hemispheres 58.5
Superior colliculus
nTPM: 66.4
2668 Female, age 75, unknown 71.9
2261 Male, age 18, unknown 71.5
1895 Male, age 76, right hemisphere 71.1
2587 Male, age 74, left hemisphere 69.3
1839 Male, age 51, unknown 69.1
1796 Male, age 53, unknown 68.6
1913 Female, age 42, unknown 66.9
2087 Female, age 72, unknown 64.7
1995 Male, age 72, unknown 57.6
2664 Male, age 75, both hemispheres 53.7
Ventral tegmental area
nTPM: 67.5
2218 Male, age 76, both hemispheres 70.2
2223 Female, age 72, unknown 69.0
2410 Female, age 72, unknown 68.1
1915 Female, age 42, unknown 67.2
1942 Male, age 51, unknown 66.3
2021 Male, age 53, unknown 64.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 102.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 102.2
Samples: 139

Max nTPM: 228.7
Min nTPM: 24.1
Std nTPM: 35.2
Median nTPM: 101.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 228.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 212.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 205.1
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 186.6
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 178.6
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 159.8
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 156.9
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 152.1
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 150.0
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 149.6
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 148.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 201.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 201.6
FF:10158-103A5 76 years, female 201.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 2.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 2.2
Samples: 4

Max nTPM: 3.1
Min nTPM: 1.4
Sample A Male 1.4
Sample B Male 1.7
Sample C Female 3.1
Sample D Female 2.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
71492760 Antisense, RP_050913_01_E04, Mouse strain C57BL/6J (56 days, male) 0.1

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