MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:137.3 nTPM
HPA:137.3 nTPM
GTEx:156.3 nTPM
FANTOM5:118.1 Scaled Tags Per Million
Pig:28.5 nTPM
Mouse:18.9 nTPM

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 137.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 133.5
2586 Male, age 75, left hemisphere 137.4
2019 Male, age 18, unknown 136.5
2411 Female, age 72, unknown 135.6
1870 Female, age 42, unknown 135.4
1827 Male, age 72, unknown 134.8
2219 Male, age 76, both hemispheres 132.7
1833 Male, age 53, unknown 132.5
2828 Female, age 72, unknown 131.1
1830 Male, age 51, unknown 130.3
2666 Male, age 74, left hemisphere 129.0
Dorsal raphe nucleus
nTPM: 134.2
2298 Female, age 72, unknown 140.5
2047 Male, age 72, unknown 134.8
2750 Male, age 76, both hemispheres 134.7
1828 Male, age 53, unknown 132.8
2016 Female, age 72, unknown 127.9
Inferior colliculus
nTPM: 135.3
2097 Female, age 72, unknown 141.8
1890 Male, age 53, unknown 137.1
1848 Female, age 42, unknown 132.4
2849 Male, age 72, unknown 130.0
Median raphe nucleus
nTPM: 132.2
2220 Male, age 76, midline 132.2
Pedunculopontine tegmental nucleus
nTPM: 134.0
2334 Male, age 80, both hemispheres 136.8
1921 Female, age 85, both hemispheres 133.1
2338 Male, age 61, both hemispheres 132.1
Periaquaductal grey, anterior
nTPM: 132.1
2502 Female, age 75, unknown 135.5
1795 Male, age 51, unknown 131.4
1947 Male, age 18, unknown 129.4
Periaquaductal grey, dorsal
nTPM: 130.9
1840 Male, age 53, unknown 133.9
1831 Male, age 72, unknown 131.7
2850 Male, age 76, both hemispheres 130.7
2464 Female, age 72, unknown 127.3
Periaquaductal grey, lateral
nTPM: 130.6
2053 Male, age 18, unknown 132.5
2272 Male, age 74, both hemispheres 131.5
2140 Male, age 76, both hemispheres 127.9
Pretectal area
nTPM: 134.3
2007 Male, age 72, unknown 141.2
1817 Female, age 42, unknown 140.1
1816 Male, age 51, unknown 138.0
1944 Female, age 72, unknown 137.2
2273 Male, age 74, both hemispheres 134.6
1815 Male, age 53, unknown 133.8
2224 Female, age 72, unknown 133.1
2667 Female, age 75, unknown 132.9
2316 Male, age 76, right hemisphere 130.7
2825 Male, age 18, unknown 129.7
2407 Male, age 75, both hemispheres 126.1
Red nucleus
nTPM: 137.3
1821 Female, age 72, unknown 143.4
2588 Male, age 74, left hemisphere 139.8
2227 Male, age 72, unknown 139.3
2785 Male, age 18, unknown 138.9
2725 Female, age 75, unknown 138.6
1865 Male, age 51, unknown 138.2
2503 Female, age 72, unknown 138.0
2769 Male, age 72, unknown 137.9
1954 Female, age 42, unknown 137.0
1904 Male, age 53, unknown 136.6
2823 Male, age 76, right hemisphere 131.5
2584 Male, age 75, left hemisphere 128.6
Substantia nigra
nTPM: 136.7
1916 Female, age 42, unknown 145.9
1851 Male, age 51, unknown 142.2
1889 Female, age 72, unknown 140.3
2409 Female, age 72, unknown 137.5
2699 Male, age 18, unknown 137.3
2665 Male, age 74, both hemispheres 133.8
1941 Male, age 53, unknown 133.4
2590 Female, age 75, unknown 133.3
2241 Male, age 72, unknown 132.6
2583 Male, age 75, right hemisphere 131.1
Superior colliculus
nTPM: 132.0
1796 Male, age 53, unknown 135.3
2587 Male, age 74, left hemisphere 134.3
1913 Female, age 42, unknown 132.9
1895 Male, age 76, right hemisphere 132.5
2087 Female, age 72, unknown 132.5
2261 Male, age 18, unknown 131.8
2668 Female, age 75, unknown 131.3
2664 Male, age 75, both hemispheres 130.2
1839 Male, age 51, unknown 129.7
1995 Male, age 72, unknown 129.0
Ventral tegmental area
nTPM: 136.9
2410 Female, age 72, unknown 141.4
2223 Female, age 72, unknown 140.4
1915 Female, age 42, unknown 138.1
2218 Male, age 76, both hemispheres 134.5
2021 Male, age 53, unknown 133.7
1942 Male, age 51, unknown 133.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 156.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 156.3
Samples: 139

Max nTPM: 423.9
Min nTPM: 60.2
Std nTPM: 48.1
Median nTPM: 149.2
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 423.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 394.3
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 265.5
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 257.5
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 245.5
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 233.0
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 231.4
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 224.2
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 222.4
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 221.8
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 221.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 118.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 118.1
FF:10158-103A5 76 years, female 118.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 28.5
Pig sample Sample description nTPM
Midbrain
nTPM: 28.5
Samples: 4

Max nTPM: 32.8
Min nTPM: 23.9
Sample A Female 32.8
Sample B Female 29.0
Sample C Male 28.4
Sample D Male 23.9
Periaqueductal gray
nTPM: 20.2
Samples: 3

Max nTPM: 24.1
Min nTPM: 17.8
Sample B Female 17.8
Sample C Male 24.1
Sample D Male 18.8
Substantia nigra
nTPM: 25.1
Samples: 4

Max nTPM: 36.3
Min nTPM: 15.6
Sample A Female 36.3
Sample B Female 22.6
Sample C Male 26.0
Sample D Male 15.6
Superior colliculi
nTPM: 28.5
Samples: 4

Max nTPM: 40.1
Min nTPM: 22.6
Sample A Female 40.1
Sample B Female 27.8
Sample C Male 22.6
Sample D Male 23.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 18.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 18.9
Samples: 4

Max nTPM: 23.4
Min nTPM: 15.1
Sample A Male 23.4
Sample B Male 16.6
Sample C Female 15.1
Sample D Female 20.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.