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BRAIN SUBSTANTIA NIGRA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
PRIMARY MOUSE DATA
ANTIBODIES
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VALIDATION
Brain proteome
SUBSTANTIA NIGRA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
HPA:76.6 nTPM
GTEx:114.8 nTPM
FANTOM5:43.4 Scaled Tags Per Million
Pig:271.9 nTPM

SUBSTANTIA NIGRA - HPA Brain RNA-seq
Avg nTPM 76.6
Sample id Sample description nTPM
Substantia nigra
nTPM: 76.6
1889 Female, age 72, unknown 305.4
2665 Male, age 74, both hemispheres 111.3
2409 Female, age 72, unknown 63.0
2583 Male, age 75, right hemisphere 45.7
2590 Female, age 75, unknown 44.5
1916 Female, age 42, unknown 43.4
1851 Male, age 51, unknown 41.3
2241 Male, age 72, unknown 40.1
1941 Male, age 53, unknown 39.0
2699 Male, age 18, unknown 32.7

SUBSTANTIA NIGRA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 114.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 114.8
Samples: 139

Max nTPM: 697.0
Min nTPM: 7.9
Std nTPM: 100.6
Median nTPM: 85.6
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 697.0
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 522.5
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 432.3
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 421.6
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 307.9
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 307.1
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 302.9
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 281.0
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 270.1
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 266.6
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 257.8
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 249.6
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 242.3
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 237.8
GTEX-1LSNL-0011-R2a-SM-EZ6MK 50-59 years, male 232.2
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 228.0
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 220.0
GTEX-13FXS-0011-R2b-SM-5K7XX 50-59 years, male 208.9
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 192.4
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 191.8
GTEX-1F6IF-0011-R2b-SM-9QEHB 60-69 years, male 189.7
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 187.2
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 186.3
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 178.4
GTEX-1F6I4-0011-R2a-SM-CL536 60-69 years, male 174.8
GTEX-145LS-0011-R2a-SM-5PNZI 60-69 years, female 173.8
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 171.0
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 169.9
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 169.2
GTEX-T6MN-0011-R2A-SM-32QOW 50-59 years, male 168.9
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 167.9
GTEX-1CB4G-0011-R2a-SM-9QEGQ 60-69 years, male 166.7
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 162.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 157.8
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 155.3
GTEX-14JG1-0011-R2a-SM-5ZZVE 40-49 years, male 154.9
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 147.7
GTEX-15DCD-0011-R2b-SM-6LPIE 70-79 years, female 145.8
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 143.8
GTEX-13G51-0011-R2b-SM-5LZXS 60-69 years, male 143.2
GTEX-13N2G-0011-R2a-SM-5MR4Q 60-69 years, male 139.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 127.7
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 127.4
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 123.2
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 121.3
GTEX-1A3MX-0011-R2b-SM-7EWFL 60-69 years, male 120.3
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 116.2
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 114.9
GTEX-14ASI-0011-R2b-SM-5YY9H 60-69 years, male 113.9
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 113.4
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 112.2
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 109.7
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 109.0
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 107.6
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 106.4
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 106.4
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 105.5
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 104.7
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 102.8
GTEX-13X6I-0011-R2b-SM-5PNWQ 60-69 years, male 102.3
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 101.5
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 100.3
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 98.2
GTEX-13O3O-0011-R2b-SM-5P9H1 60-69 years, female 94.8
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 94.8
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 94.5
GTEX-18464-0011-R2a-SM-731AL 50-59 years, male 92.9
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 91.7
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 88.5
GTEX-13RTJ-0011-R2a-SM-5PNW9 60-69 years, male 85.6
GTEX-17EVP-0011-R2a-SM-7LG4W 40-49 years, male 85.2
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 83.2
GTEX-147GR-0011-R2b-SM-5S2RQ 60-69 years, male 82.7
GTEX-11GSO-0011-R2a-SM-57WDF 60-69 years, male 81.7
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 81.4
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 77.3
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 76.3
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 76.0
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 74.7
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 73.8
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 73.3
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 73.1
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 72.8
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 71.8
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 71.6
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 70.4
GTEX-PWO3-0011-R2A-SM-2S1OX 60-69 years, female 69.9
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 69.3
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 63.5
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 61.7
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 61.5
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 61.4
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 61.2
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 57.5
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 56.6
GTEX-1IKJJ-0011-R2b-SM-ARZLJ 60-69 years, male 55.7
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 52.6
GTEX-XLM4-0011-R2B-SM-4AT5Z 60-69 years, male 51.4
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 51.3
GTEX-16Z82-0011-R2b-SM-79OK9 60-69 years, male 51.1
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 50.4
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 50.2
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 50.2
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 49.8
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 49.2
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 45.1
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 43.5
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 43.0
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 40.5
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 40.3
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 40.2
GTEX-11WQC-0011-R2a-SM-DO927 60-69 years, male 40.2
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 39.2
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 38.6
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 38.5
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 38.5
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 37.5
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 37.4
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 35.1
GTEX-1I1CD-0011-R2a-SM-CM2T3 60-69 years, female 34.8
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 33.4
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 32.8
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 31.7
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 31.7
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 31.5
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 30.7
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 29.1
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 29.0
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 28.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 28.0
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 25.5
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 23.2
GTEX-1445S-0011-R2b-SM-5PNUH 60-69 years, male 21.7
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 20.6
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 16.7
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 13.3
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 11.8
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 8.7
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 7.9
Show allShow less

SUBSTANTIA NIGRA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 43.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 43.4
FF:10158-103A5 76 years, female 43.4

SUBSTANTIA NIGRA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 271.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 271.9
Samples: 4

Max nTPM: 432.7
Min nTPM: 149.1
Sample A Female 309.3
Sample B Female 196.5
Sample C Male 432.7
Sample D Male 149.1

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