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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Glial cells: Not detected
Neuronal cells: High
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
GTEx:1530.2 nTPM
FANTOM5:1674.1 Scaled Tags Per Million
Pig:1189.7 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody HPA005792
Glial cells Not detected
Neuronal cells High



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 1530.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 1530.2
Samples: 246

Max nTPM: 5346.9
Min nTPM: 122.3
Std nTPM: 984.0
Median nTPM: 1394.9
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 5346.9
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 4658.3
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 4528.4
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 3898.6
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 3799.4
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 3684.9
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 3650.4
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 3499.9
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 3461.4
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 3436.0
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 3370.0
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 3288.8
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 3252.0
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 3223.0
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 3112.6
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 3078.6
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 3064.8
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 3058.3
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 3054.6
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 3049.2
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 3006.4
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 2947.2
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 2917.1
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 2902.3
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 2881.0
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 2812.4
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 2785.3
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 2779.8
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 2742.1
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 2733.9
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 2725.5
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 2724.7
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 2689.5
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 2686.8
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 2681.8
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 2602.4
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 2563.4
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 2529.9
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 2499.8
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 2498.0
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 2460.4
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 2459.2
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 2445.4
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 2432.1
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 2408.9
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 2389.7
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 2387.3
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 2339.6
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 2334.4
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 2326.7
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 2289.6
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 2279.9
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 2267.9
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 2230.0
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 2229.9
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 2226.1
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 2215.9
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 2199.9
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 2178.5
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 2152.7
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 2142.5
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 2125.0
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 2124.7
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 2121.0
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 2117.8
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 2108.7
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 2088.4
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 2073.5
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 2071.0
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 2062.6
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 2050.9
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 2018.1
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 2011.6
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 1987.2
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 1984.8
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 1969.1
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 1957.1
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 1954.0
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 1942.0
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 1929.8
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 1909.8
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 1907.2
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 1893.6
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 1872.1
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 1867.0
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 1864.8
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 1852.3
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 1850.8
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 1843.7
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 1840.1
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 1837.4
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 1822.6
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 1822.1
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 1804.4
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 1800.9
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 1794.6
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 1782.1
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 1777.9
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 1770.3
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 1769.3
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 1760.9
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 1752.6
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 1735.4
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 1711.0
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 1698.4
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 1695.8
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 1664.9
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 1651.8
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 1624.4
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 1619.6
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 1616.7
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 1592.7
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 1579.5
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 1576.8
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 1545.6
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 1533.5
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 1514.3
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 1514.0
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 1510.3
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 1462.7
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 1462.6
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 1439.2
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 1396.9
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 1392.9
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 1383.0
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 1382.2
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 1364.5
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 1358.3
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 1328.1
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 1317.2
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 1314.5
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 1313.9
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 1305.1
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 1304.6
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 1301.4
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 1299.1
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 1267.6
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 1262.3
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 1256.5
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 1256.5
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 1240.8
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 1232.4
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 1228.2
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 1227.8
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 1226.8
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 1207.7
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 1168.4
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 1139.5
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 1137.4
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 1108.9
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 1090.7
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 1078.8
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 1066.7
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 1063.1
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 1061.8
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 1057.5
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 1057.5
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 1053.1
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 1053.0
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 1047.6
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 1011.4
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 985.3
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 968.4
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 964.2
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 938.8
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 937.3
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 920.3
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 912.0
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 910.9
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 906.5
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 890.0
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 883.6
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 865.6
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 857.7
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 850.3
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 843.3
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 830.3
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 826.9
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 826.2
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 806.5
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 796.2
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 774.7
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 772.1
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 770.8
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 761.3
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 736.1
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 685.4
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 684.3
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 670.8
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 647.0
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 629.6
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 617.6
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 607.7
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 599.1
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 596.0
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 576.6
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 540.9
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 525.5
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 515.7
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 506.1
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 467.0
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 462.3
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 454.6
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 442.0
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 431.0
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 420.9
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 416.3
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 404.8
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 394.5
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 389.8
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 383.6
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 377.6
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 359.9
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 356.2
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 352.2
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 339.6
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 332.3
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 331.3
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 328.8
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 328.0
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 315.1
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 311.0
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 306.9
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 296.0
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 287.0
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 284.0
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 283.9
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 281.9
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 276.7
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 273.3
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 261.0
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 243.7
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 232.9
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 231.2
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 228.0
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 216.7
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 215.8
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 209.2
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 188.5
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 187.4
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 185.9
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 180.6
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 172.6
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 166.9
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 132.6
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 122.3
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 1674.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 1674.1
FF:10164-103B2 76 years, female 1674.1

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 1189.7
Pig sample Sample description nTPM
Caudate
nTPM: 1189.7
Samples: 4

Max nTPM: 1914.1
Min nTPM: 705.6
Sample A Female 705.6
Sample B Female 893.4
Sample C Male 1914.1
Sample D Male 1245.6

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