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RGPD6
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BRAIN MIDBRAIN Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Midbrain
MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:1.5 nTPM
HPA:1.5 nTPM
GTEx:8.5 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 1.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 0.1
1870 Female, age 42, unknown 1.2
1827 Male, age 72, unknown 0.5
1830 Male, age 51, unknown 0.0
1833 Male, age 53, unknown 0.0
2019 Male, age 18, unknown 0.0
2219 Male, age 76, both hemispheres 0.0
2411 Female, age 72, unknown 0.0
2586 Male, age 75, left hemisphere 0.0
2666 Male, age 74, left hemisphere 0.0
2828 Female, age 72, unknown 0.0
Dorsal raphe nucleus
nTPM: 1.0
2298 Female, age 72, unknown 5.0
1828 Male, age 53, unknown 0.0
2016 Female, age 72, unknown 0.0
2047 Male, age 72, unknown 0.0
2750 Male, age 76, both hemispheres 0.0
Inferior colliculus
nTPM: 1.5
2097 Female, age 72, unknown 3.8
1890 Male, age 53, unknown 2.4
1848 Female, age 42, unknown 0.0
2849 Male, age 72, unknown 0.0
Median raphe nucleus
nTPM: 0.3
2220 Male, age 76, midline 0.3
Pedunculopontine tegmental nucleus
nTPM: 0.0
1921 Female, age 85, both hemispheres 0.0
2334 Male, age 80, both hemispheres 0.0
2338 Male, age 61, both hemispheres 0.0
Periaquaductal grey, anterior
nTPM: 0.9
1795 Male, age 51, unknown 2.1
1947 Male, age 18, unknown 0.5
2502 Female, age 75, unknown 0.0
Periaquaductal grey, dorsal
nTPM: 1.3
2850 Male, age 76, both hemispheres 3.0
1831 Male, age 72, unknown 1.6
2464 Female, age 72, unknown 0.5
1840 Male, age 53, unknown 0.0
Periaquaductal grey, lateral
nTPM: 0.9
2140 Male, age 76, both hemispheres 2.1
2272 Male, age 74, both hemispheres 0.5
2053 Male, age 18, unknown 0.0
Pretectal area
nTPM: 0.6
2224 Female, age 72, unknown 3.7
2273 Male, age 74, both hemispheres 1.4
2007 Male, age 72, unknown 1.3
2825 Male, age 18, unknown 0.8
1815 Male, age 53, unknown 0.0
1816 Male, age 51, unknown 0.0
1817 Female, age 42, unknown 0.0
1944 Female, age 72, unknown 0.0
2316 Male, age 76, right hemisphere 0.0
2407 Male, age 75, both hemispheres 0.0
2667 Female, age 75, unknown 0.0
Red nucleus
nTPM: 0.6
1904 Male, age 53, unknown 2.9
2588 Male, age 74, left hemisphere 1.5
2503 Female, age 72, unknown 1.3
1954 Female, age 42, unknown 0.5
2227 Male, age 72, unknown 0.4
1821 Female, age 72, unknown 0.1
1865 Male, age 51, unknown 0.0
2584 Male, age 75, left hemisphere 0.0
2725 Female, age 75, unknown 0.0
2769 Male, age 72, unknown 0.0
2785 Male, age 18, unknown 0.0
2823 Male, age 76, right hemisphere 0.0
Substantia nigra
nTPM: 0.1
2590 Female, age 75, unknown 1.6
1851 Male, age 51, unknown 0.0
1889 Female, age 72, unknown 0.0
1916 Female, age 42, unknown 0.0
1941 Male, age 53, unknown 0.0
2241 Male, age 72, unknown 0.0
2409 Female, age 72, unknown 0.0
2583 Male, age 75, right hemisphere 0.0
2665 Male, age 74, both hemispheres 0.0
2699 Male, age 18, unknown 0.0
Superior colliculus
nTPM: 0.4
1796 Male, age 53, unknown 2.3
2087 Female, age 72, unknown 2.3
1839 Male, age 51, unknown 0.0
1895 Male, age 76, right hemisphere 0.0
1913 Female, age 42, unknown 0.0
1995 Male, age 72, unknown 0.0
2261 Male, age 18, unknown 0.0
2587 Male, age 74, left hemisphere 0.0
2664 Male, age 75, both hemispheres 0.0
2668 Female, age 75, unknown 0.0
Ventral tegmental area
nTPM: 0.4
2218 Male, age 76, both hemispheres 1.9
1915 Female, age 42, unknown 0.8
1942 Male, age 51, unknown 0.0
2021 Male, age 53, unknown 0.0
2223 Female, age 72, unknown 0.0
2410 Female, age 72, unknown 0.0

MIDBRAIN - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 8.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 8.5
Samples: 139

Max nTPM: 17.0
Min nTPM: 0.1
Std nTPM: 2.9
Median nTPM: 8.5
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 17.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 15.7
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 14.6
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 14.1
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 14.1
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 13.7
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 13.1
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 13.0
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 13.0
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 12.8
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 12.7
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 12.7
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 12.6
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 12.6
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 12.5
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 12.1
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 12.1
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 12.0
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 12.0
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 11.8
GTEX-147GR-0011-R2b-SM-5S2RQ 60-69 years, male 11.6
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 11.5
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 11.3
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 11.3
GTEX-13RTJ-0011-R2a-SM-5PNW9 60-69 years, male 11.2
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 11.2
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 11.1
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 11.0
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 11.0
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 10.8
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 10.7
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 10.7
GTEX-T6MN-0011-R2A-SM-32QOW 50-59 years, male 10.5
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 10.5
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 10.4
GTEX-145LS-0011-R2a-SM-5PNZI 60-69 years, female 10.4
GTEX-1A3MX-0011-R2b-SM-7EWFL 60-69 years, male 10.4
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 10.3
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 10.2
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 10.2
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 10.1
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 10.0
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 9.9
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 9.8
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 9.8
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 9.8
GTEX-11WQC-0011-R2a-SM-DO927 60-69 years, male 9.8
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 9.7
GTEX-14ASI-0011-R2b-SM-5YY9H 60-69 years, male 9.6
GTEX-17EVP-0011-R2a-SM-7LG4W 40-49 years, male 9.6
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 9.6
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 9.5
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 9.5
GTEX-1CB4G-0011-R2a-SM-9QEGQ 60-69 years, male 9.3
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 9.2
GTEX-1445S-0011-R2b-SM-5PNUH 60-69 years, male 9.2
GTEX-PWO3-0011-R2A-SM-2S1OX 60-69 years, female 9.2
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 9.1
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 9.0
GTEX-14JG1-0011-R2a-SM-5ZZVE 40-49 years, male 9.0
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 9.0
GTEX-1F6I4-0011-R2a-SM-CL536 60-69 years, male 9.0
GTEX-13N2G-0011-R2a-SM-5MR4Q 60-69 years, male 8.9
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 8.9
GTEX-18464-0011-R2a-SM-731AL 50-59 years, male 8.8
GTEX-11GSO-0011-R2a-SM-57WDF 60-69 years, male 8.6
GTEX-13G51-0011-R2b-SM-5LZXS 60-69 years, male 8.6
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 8.6
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 8.6
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 8.5
GTEX-1F6IF-0011-R2b-SM-9QEHB 60-69 years, male 8.4
GTEX-13O3O-0011-R2b-SM-5P9H1 60-69 years, female 8.2
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 8.1
GTEX-13FXS-0011-R2b-SM-5K7XX 50-59 years, male 8.0
GTEX-16Z82-0011-R2b-SM-79OK9 60-69 years, male 8.0
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 7.9
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 7.9
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 7.8
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 7.8
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 7.7
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 7.7
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 7.7
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 7.7
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 7.5
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 7.4
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 7.4
GTEX-1I1CD-0011-R2a-SM-CM2T3 60-69 years, female 7.4
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 7.4
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 7.4
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 7.3
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 7.2
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 7.2
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 7.1
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 7.0
GTEX-15DCD-0011-R2b-SM-6LPIE 70-79 years, female 7.0
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 7.0
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 7.0
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 6.7
GTEX-XLM4-0011-R2B-SM-4AT5Z 60-69 years, male 6.7
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 6.6
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 6.5
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 6.5
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 6.5
GTEX-1LSNL-0011-R2a-SM-EZ6MK 50-59 years, male 6.5
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 6.4
GTEX-13X6I-0011-R2b-SM-5PNWQ 60-69 years, male 6.4
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 6.2
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 6.2
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 6.1
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 6.1
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 6.0
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 5.9
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 5.8
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 5.6
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 5.6
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 5.4
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 5.4
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 5.3
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 5.2
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 5.0
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 5.0
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 5.0
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 4.9
GTEX-1IKJJ-0011-R2b-SM-ARZLJ 60-69 years, male 4.8
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 4.7
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 4.7
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 4.7
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 4.5
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 4.3
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 4.3
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 4.2
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 4.1
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 4.1
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 3.9
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 3.7
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 2.9
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 2.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 2.8
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 0.1
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