MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:152.9 nTPM
HPA:152.9 nTPM
GTEx:130.4 nTPM
FANTOM5:292.0 Scaled Tags Per Million
Pig:71.6 nTPM
Mouse:61.8 nTPM
Allen mouse:2.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 152.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 145.8
2828 Female, age 72, unknown 163.2
1870 Female, age 42, unknown 159.6
1830 Male, age 51, unknown 149.9
2586 Male, age 75, left hemisphere 149.0
2411 Female, age 72, unknown 147.8
1833 Male, age 53, unknown 146.6
2666 Male, age 74, left hemisphere 142.2
1827 Male, age 72, unknown 139.7
2019 Male, age 18, unknown 138.8
2219 Male, age 76, both hemispheres 121.4
Dorsal raphe nucleus
nTPM: 151.0
2016 Female, age 72, unknown 163.5
1828 Male, age 53, unknown 152.7
2047 Male, age 72, unknown 149.7
2298 Female, age 72, unknown 147.7
2750 Male, age 76, both hemispheres 141.6
Inferior colliculus
nTPM: 143.4
1848 Female, age 42, unknown 147.1
1890 Male, age 53, unknown 142.9
2849 Male, age 72, unknown 142.9
2097 Female, age 72, unknown 140.6
Median raphe nucleus
nTPM: 137.6
2220 Male, age 76, midline 137.6
Pedunculopontine tegmental nucleus
nTPM: 144.9
2338 Male, age 61, both hemispheres 158.9
2334 Male, age 80, both hemispheres 142.1
1921 Female, age 85, both hemispheres 133.8
Periaquaductal grey, anterior
nTPM: 144.0
2502 Female, age 75, unknown 146.1
1795 Male, age 51, unknown 145.7
1947 Male, age 18, unknown 140.2
Periaquaductal grey, dorsal
nTPM: 150.2
1831 Male, age 72, unknown 154.4
2850 Male, age 76, both hemispheres 151.0
1840 Male, age 53, unknown 149.5
2464 Female, age 72, unknown 145.9
Periaquaductal grey, lateral
nTPM: 152.2
2140 Male, age 76, both hemispheres 157.7
2053 Male, age 18, unknown 155.2
2272 Male, age 74, both hemispheres 143.8
Pretectal area
nTPM: 141.8
2316 Male, age 76, right hemisphere 151.9
2273 Male, age 74, both hemispheres 151.4
2825 Male, age 18, unknown 150.6
2224 Female, age 72, unknown 145.3
2667 Female, age 75, unknown 144.0
1815 Male, age 53, unknown 141.7
1817 Female, age 42, unknown 140.4
1944 Female, age 72, unknown 138.1
2407 Male, age 75, both hemispheres 136.9
1816 Male, age 51, unknown 131.9
2007 Male, age 72, unknown 128.1
Red nucleus
nTPM: 152.9
1904 Male, age 53, unknown 162.9
1954 Female, age 42, unknown 162.8
1821 Female, age 72, unknown 162.3
2227 Male, age 72, unknown 159.8
2769 Male, age 72, unknown 157.0
2503 Female, age 72, unknown 155.8
1865 Male, age 51, unknown 154.5
2725 Female, age 75, unknown 151.0
2823 Male, age 76, right hemisphere 150.9
2588 Male, age 74, left hemisphere 145.5
2785 Male, age 18, unknown 139.1
2584 Male, age 75, left hemisphere 132.8
Substantia nigra
nTPM: 150.5
2699 Male, age 18, unknown 176.9
1851 Male, age 51, unknown 154.1
1916 Female, age 42, unknown 153.6
2590 Female, age 75, unknown 153.5
2409 Female, age 72, unknown 153.1
2665 Male, age 74, both hemispheres 152.8
2583 Male, age 75, right hemisphere 145.0
1889 Female, age 72, unknown 139.7
2241 Male, age 72, unknown 138.3
1941 Male, age 53, unknown 137.6
Superior colliculus
nTPM: 146.3
1995 Male, age 72, unknown 168.8
1913 Female, age 42, unknown 163.8
2587 Male, age 74, left hemisphere 147.2
2087 Female, age 72, unknown 146.3
1796 Male, age 53, unknown 144.1
1839 Male, age 51, unknown 144.1
2664 Male, age 75, both hemispheres 141.8
2668 Female, age 75, unknown 138.5
2261 Male, age 18, unknown 136.1
1895 Male, age 76, right hemisphere 132.6
Ventral tegmental area
nTPM: 151.4
1915 Female, age 42, unknown 153.7
2021 Male, age 53, unknown 153.4
2410 Female, age 72, unknown 152.6
2223 Female, age 72, unknown 151.4
1942 Male, age 51, unknown 150.9
2218 Male, age 76, both hemispheres 146.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 130.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 130.4
Samples: 139

Max nTPM: 335.0
Min nTPM: 25.6
Std nTPM: 50.5
Median nTPM: 120.1
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 335.0
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 306.6
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 273.9
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 269.0
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 262.8
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 252.4
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 235.7
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 226.6
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 224.0
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 212.7
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 208.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 292.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 292.0
FF:10158-103A5 76 years, female 292.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 71.6
Pig sample Sample description nTPM
Midbrain
nTPM: 63.3
Samples: 4

Max nTPM: 101.9
Min nTPM: 39.1
Sample A Female 101.9
Sample B Female 58.4
Sample C Male 53.7
Sample D Male 39.1
Periaqueductal gray
nTPM: 51.0
Samples: 3

Max nTPM: 55.2
Min nTPM: 43.6
Sample B Female 54.2
Sample C Male 55.2
Sample D Male 43.6
Substantia nigra
nTPM: 65.9
Samples: 4

Max nTPM: 75.0
Min nTPM: 55.6
Sample A Female 66.1
Sample B Female 75.0
Sample C Male 55.6
Sample D Male 66.7
Superior colliculi
nTPM: 71.6
Samples: 4

Max nTPM: 101.6
Min nTPM: 55.8
Sample A Female 73.1
Sample B Female 101.6
Sample C Male 55.9
Sample D Male 55.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 61.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 61.8
Samples: 4

Max nTPM: 65.3
Min nTPM: 57.9
Sample A Male 65.3
Sample B Male 57.9
Sample C Female 61.9
Sample D Female 61.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.0
1956 Antisense, RP_Baylor_253962, Mouse strain C57BL/6J (56 days, male) 2.0
1957 Antisense, RP_Baylor_253962, Mouse strain C57BL/6J (56 days, male) 1.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
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