MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:31.3 nTPM
HPA:31.3 nTPM
GTEx:32.7 nTPM
FANTOM5:73.5 Scaled Tags Per Million
Pig:18.0 nTPM
Mouse:4.9 nTPM
Allen mouse:1.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 31.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 29.6
1830 Male, age 51, unknown 31.4
1833 Male, age 53, unknown 31.0
2666 Male, age 74, left hemisphere 30.7
2828 Female, age 72, unknown 30.5
1870 Female, age 42, unknown 29.7
2019 Male, age 18, unknown 29.2
2411 Female, age 72, unknown 28.9
2586 Male, age 75, left hemisphere 28.7
2219 Male, age 76, both hemispheres 28.1
1827 Male, age 72, unknown 27.9
Dorsal raphe nucleus
nTPM: 28.0
2750 Male, age 76, both hemispheres 31.6
1828 Male, age 53, unknown 28.5
2047 Male, age 72, unknown 27.8
2298 Female, age 72, unknown 26.2
2016 Female, age 72, unknown 26.0
Inferior colliculus
nTPM: 26.7
2849 Male, age 72, unknown 28.3
1848 Female, age 42, unknown 27.0
1890 Male, age 53, unknown 26.6
2097 Female, age 72, unknown 24.8
Median raphe nucleus
nTPM: 29.5
2220 Male, age 76, midline 29.5
Pedunculopontine tegmental nucleus
nTPM: 30.3
2338 Male, age 61, both hemispheres 34.2
2334 Male, age 80, both hemispheres 29.4
1921 Female, age 85, both hemispheres 27.2
Periaquaductal grey, anterior
nTPM: 27.6
1947 Male, age 18, unknown 29.1
1795 Male, age 51, unknown 27.3
2502 Female, age 75, unknown 26.4
Periaquaductal grey, dorsal
nTPM: 27.4
1831 Male, age 72, unknown 28.5
2850 Male, age 76, both hemispheres 28.0
2464 Female, age 72, unknown 27.4
1840 Male, age 53, unknown 25.7
Periaquaductal grey, lateral
nTPM: 27.3
2272 Male, age 74, both hemispheres 28.6
2053 Male, age 18, unknown 26.6
2140 Male, age 76, both hemispheres 26.6
Pretectal area
nTPM: 28.0
2667 Female, age 75, unknown 30.9
2407 Male, age 75, both hemispheres 29.9
1815 Male, age 53, unknown 29.1
2825 Male, age 18, unknown 28.4
2007 Male, age 72, unknown 28.1
2316 Male, age 76, right hemisphere 28.1
1944 Female, age 72, unknown 27.1
1817 Female, age 42, unknown 27.0
2224 Female, age 72, unknown 26.5
2273 Male, age 74, both hemispheres 26.5
1816 Male, age 51, unknown 26.3
Red nucleus
nTPM: 31.3
2823 Male, age 76, right hemisphere 35.0
1904 Male, age 53, unknown 33.8
1865 Male, age 51, unknown 33.1
2584 Male, age 75, left hemisphere 31.7
2769 Male, age 72, unknown 31.7
2588 Male, age 74, left hemisphere 31.6
2227 Male, age 72, unknown 31.0
1954 Female, age 42, unknown 30.6
2725 Female, age 75, unknown 29.6
2503 Female, age 72, unknown 29.3
2785 Male, age 18, unknown 29.2
1821 Female, age 72, unknown 28.8
Substantia nigra
nTPM: 28.3
2699 Male, age 18, unknown 31.1
1851 Male, age 51, unknown 29.7
2409 Female, age 72, unknown 29.0
2590 Female, age 75, unknown 28.9
2583 Male, age 75, right hemisphere 28.6
2665 Male, age 74, both hemispheres 28.2
1889 Female, age 72, unknown 27.7
1941 Male, age 53, unknown 27.6
1916 Female, age 42, unknown 26.6
2241 Male, age 72, unknown 25.4
Superior colliculus
nTPM: 28.5
1913 Female, age 42, unknown 32.1
2664 Male, age 75, both hemispheres 30.6
1995 Male, age 72, unknown 29.8
2587 Male, age 74, left hemisphere 28.1
2087 Female, age 72, unknown 28.0
1895 Male, age 76, right hemisphere 27.6
2668 Female, age 75, unknown 27.6
1839 Male, age 51, unknown 27.5
1796 Male, age 53, unknown 26.6
2261 Male, age 18, unknown 26.6
Ventral tegmental area
nTPM: 27.8
2223 Female, age 72, unknown 31.2
2218 Male, age 76, both hemispheres 28.4
2410 Female, age 72, unknown 27.3
2021 Male, age 53, unknown 26.9
1915 Female, age 42, unknown 26.6
1942 Male, age 51, unknown 26.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 32.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 32.7
Samples: 139

Max nTPM: 77.3
Min nTPM: 11.2
Std nTPM: 9.4
Median nTPM: 31.7
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 77.3
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 64.9
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 62.1
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 55.5
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 53.0
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 51.7
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 51.4
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 47.9
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 46.8
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 45.9
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 44.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 73.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 73.5
FF:10158-103A5 76 years, female 73.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 18.0
Pig sample Sample description nTPM
Midbrain
nTPM: 14.6
Samples: 4

Max nTPM: 21.8
Min nTPM: 5.9
Sample A Female 5.9
Sample B Female 13.6
Sample C Male 21.8
Sample D Male 17.1
Periaqueductal gray
nTPM: 14.7
Samples: 3

Max nTPM: 21.3
Min nTPM: 11.1
Sample B Female 11.1
Sample C Male 21.3
Sample D Male 11.7
Substantia nigra
nTPM: 18.0
Samples: 4

Max nTPM: 31.3
Min nTPM: 5.3
Sample A Female 23.5
Sample B Female 11.8
Sample C Male 31.3
Sample D Male 5.3
Superior colliculi
nTPM: 13.0
Samples: 4

Max nTPM: 15.4
Min nTPM: 7.0
Sample A Female 14.9
Sample B Female 7.0
Sample C Male 14.7
Sample D Male 15.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 4.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 5.0
Samples: 4

Max nTPM: 6.2
Min nTPM: 3.3
Sample A Male 3.3
Sample B Male 5.4
Sample C Female 4.9
Sample D Female 6.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.8
69854587 Antisense, RP_050324_04_C08, Mouse strain C57BL/6J (56 days, male) 1.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.