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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:43.3 nTPM
HPA:43.3 nTPM
GTEx:79.9 nTPM

AMYGDALA - HPA Brain RNA-seq
Max nTPM 43.3
Sample id Sample description nTPM
Amygdala
nTPM: 34.8
2517 Female, age 94, left hemisphere 37.8
2814 Male, age 76, right hemisphere 35.6
2514 Male, age 75, right hemisphere 34.4
1987 Female, age 91, left hemisphere 33.4
2695 Female, age 67, right hemisphere 32.8
Basal amygdala
nTPM: 43.3
2685 Female, age 94, left hemisphere 56.6
2827 Female, age 67, right hemisphere 50.7
2243 Female, age 91, right hemisphere 41.7
2110 Male, age 80, left hemisphere 38.4
2609 Male, age 75, right hemisphere 37.1
1955 Male, age 76, both hemispheres 35.4
Central amygdala
nTPM: 38.1
2826 Female, age 94, left hemisphere 43.4
2701 Female, age 91, right hemisphere 41.8
2515 Male, age 75, right hemisphere 36.6
2239 Male, age 80, left hemisphere 35.9
1905 Male, age 76, both hemispheres 32.6
Corticomedial amygdala
nTPM: 42.5
2535 Female, age 67, right hemisphere 60.4
2429 Female, age 94, left hemisphere 45.9
2242 Female, age 91, right hemisphere 39.2
2829 Male, age 80, left hemisphere 38.7
2428 Male, age 75, right hemisphere 36.5
2240 Male, age 76, both hemispheres 34.6
Lateral amygdala
nTPM: 37.1
2534 Female, age 94, left hemisphere 44.1
2255 Female, age 91, right hemisphere 42.3
2256 Male, age 80, left hemisphere 39.5
1883 Male, age 76, both hemispheres 33.5
2516 Male, age 75, right hemisphere 33.3
2830 Female, age 67, right hemisphere 30.0
Stria terminalis, bed nucleus
nTPM: 38.2
2486 Female, age 94, both hemispheres 40.5
1974 Female, age 91, both hemispheres 37.2
2201 Male, age 74, unknown 37.0

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 79.9
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 79.9
Samples: 152

Max nTPM: 218.3
Min nTPM: 17.5
Std nTPM: 36.8
Median nTPM: 76.5
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 218.3
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 204.0
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 193.3
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 192.9
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 165.0
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 159.4
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 155.2
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 148.1
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 144.8
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 143.6
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 142.2
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 139.1
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 138.9
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 138.3
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 129.2
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 126.5
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 121.5
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 119.5
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 116.2
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 115.3
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 114.4
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 110.1
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 108.5
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 107.5
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 107.2
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 105.1
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 105.0
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 104.0
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 103.0
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 102.6
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 102.4
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 101.1
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 101.0
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 100.6
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 100.0
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 99.8
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 99.0
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 96.9
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 96.7
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 96.6
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 96.5
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 94.8
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 94.4
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 93.2
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 93.0
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 92.6
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 92.5
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 92.3
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 91.7
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 90.9
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 90.9
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 89.2
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 87.5
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 87.3
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 87.2
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 85.8
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 85.7
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 85.4
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 84.8
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 84.3
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 84.2
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 83.9
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 83.8
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 83.5
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 82.9
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 82.5
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 81.9
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 79.8
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 78.9
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 78.4
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 78.4
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 77.7
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 77.7
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 77.5
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 77.3
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 76.7
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 76.2
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 76.0
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 75.8
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 75.5
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 74.8
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 74.2
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 73.2
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 72.7
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 71.8
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 71.1
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 70.1
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 69.9
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 69.8
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 68.9
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 68.8
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 68.3
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 67.9
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 66.9
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 66.2
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 65.1
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 63.6
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 62.8
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 62.2
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 62.1
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 62.1
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 61.5
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 60.9
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 60.3
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 59.8
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 57.3
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 57.0
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 56.8
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 56.3
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 56.0
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 55.9
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 55.7
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 55.5
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 54.9
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 54.9
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 54.8
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 54.6
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 54.0
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 54.0
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 53.4
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 50.3
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 49.5
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 48.7
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 46.6
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 46.4
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 46.4
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 46.0
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 45.7
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 45.3
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 43.4
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 43.1
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 41.8
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 41.1
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 40.6
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 38.2
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 37.8
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 36.5
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 36.0
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 34.0
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 32.7
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 32.0
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 31.1
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 30.7
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 30.6
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 30.4
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 29.3
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 29.0
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 28.7
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 28.6
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 24.3
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 19.4
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 17.5
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