MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:36.3 nTPM
HPA:36.3 nTPM
GTEx:53.3 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 36.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 35.2
2586 Male, age 75, left hemisphere 38.0
1827 Male, age 72, unknown 36.7
2219 Male, age 76, both hemispheres 36.7
2828 Female, age 72, unknown 36.7
2666 Male, age 74, left hemisphere 36.4
2019 Male, age 18, unknown 34.4
1830 Male, age 51, unknown 34.2
1870 Female, age 42, unknown 33.8
1833 Male, age 53, unknown 33.7
2411 Female, age 72, unknown 31.8
Dorsal raphe nucleus
nTPM: 33.3
2298 Female, age 72, unknown 34.3
2750 Male, age 76, both hemispheres 34.1
2016 Female, age 72, unknown 33.0
1828 Male, age 53, unknown 32.5
2047 Male, age 72, unknown 32.5
Inferior colliculus
nTPM: 35.2
2849 Male, age 72, unknown 40.0
2097 Female, age 72, unknown 34.3
1848 Female, age 42, unknown 33.5
1890 Male, age 53, unknown 33.0
Median raphe nucleus
nTPM: 35.7
2220 Male, age 76, midline 35.7
Pedunculopontine tegmental nucleus
nTPM: 34.6
2334 Male, age 80, both hemispheres 35.6
1921 Female, age 85, both hemispheres 35.3
2338 Male, age 61, both hemispheres 32.9
Periaquaductal grey, anterior
nTPM: 35.0
1795 Male, age 51, unknown 36.2
1947 Male, age 18, unknown 35.4
2502 Female, age 75, unknown 33.5
Periaquaductal grey, dorsal
nTPM: 36.2
2850 Male, age 76, both hemispheres 40.7
1831 Male, age 72, unknown 36.4
1840 Male, age 53, unknown 34.2
2464 Female, age 72, unknown 33.6
Periaquaductal grey, lateral
nTPM: 36.1
2140 Male, age 76, both hemispheres 39.3
2053 Male, age 18, unknown 34.9
2272 Male, age 74, both hemispheres 34.2
Pretectal area
nTPM: 36.0
2407 Male, age 75, both hemispheres 42.0
2667 Female, age 75, unknown 39.4
1817 Female, age 42, unknown 36.5
1815 Male, age 53, unknown 36.2
2316 Male, age 76, right hemisphere 36.0
1816 Male, age 51, unknown 35.8
1944 Female, age 72, unknown 35.1
2224 Female, age 72, unknown 34.5
2825 Male, age 18, unknown 34.1
2273 Male, age 74, both hemispheres 33.5
2007 Male, age 72, unknown 33.3
Red nucleus
nTPM: 34.5
2584 Male, age 75, left hemisphere 40.9
2823 Male, age 76, right hemisphere 37.2
2769 Male, age 72, unknown 35.4
2725 Female, age 75, unknown 34.9
1865 Male, age 51, unknown 34.3
2227 Male, age 72, unknown 34.2
2588 Male, age 74, left hemisphere 34.2
2785 Male, age 18, unknown 33.8
1904 Male, age 53, unknown 33.3
1954 Female, age 42, unknown 32.4
1821 Female, age 72, unknown 32.0
2503 Female, age 72, unknown 31.5
Substantia nigra
nTPM: 32.2
2583 Male, age 75, right hemisphere 37.0
1941 Male, age 53, unknown 35.6
2699 Male, age 18, unknown 34.9
1889 Female, age 72, unknown 33.8
2665 Male, age 74, both hemispheres 33.4
1916 Female, age 42, unknown 31.9
2590 Female, age 75, unknown 31.1
1851 Male, age 51, unknown 30.3
2241 Male, age 72, unknown 28.9
2409 Female, age 72, unknown 25.6
Superior colliculus
nTPM: 36.3
2664 Male, age 75, both hemispheres 42.2
1895 Male, age 76, right hemisphere 38.5
1839 Male, age 51, unknown 38.3
1995 Male, age 72, unknown 36.8
1796 Male, age 53, unknown 36.0
1913 Female, age 42, unknown 35.1
2261 Male, age 18, unknown 35.0
2668 Female, age 75, unknown 34.3
2087 Female, age 72, unknown 34.2
2587 Male, age 74, left hemisphere 33.1
Ventral tegmental area
nTPM: 33.5
2218 Male, age 76, both hemispheres 36.4
2021 Male, age 53, unknown 34.9
2223 Female, age 72, unknown 34.1
1942 Male, age 51, unknown 32.8
2410 Female, age 72, unknown 31.5
1915 Female, age 42, unknown 31.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 53.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 53.3
Samples: 139

Max nTPM: 137.7
Min nTPM: 12.5
Std nTPM: 21.3
Median nTPM: 50.0
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 137.7
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 110.6
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 101.2
GTEX-18464-0011-R2a-SM-731AL 50-59 years, male 101.0
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 97.2
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 96.7
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 94.8
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 92.0
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 91.8
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 91.1
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 90.0
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The Human Protein Atlas

The Human Protein Atlas project is funded
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