BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Medium
Neuronal cells: High
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:11.9 nTPM
HPA:11.9 nTPM
GTEx:10.7 nTPM
FANTOM5:67.0 Scaled Tags Per Million
Pig:46.6 nTPM
Mouse:18.0 nTPM
Allen mouse:1.6 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA045830
Glial cells Medium
Neuronal cells High


BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 11.9
Sample id Sample description nTPM
Caudate nucleus
nTPM: 10.9
2288 Male, age 75, left hemisphere 11.9
2846 Female, age 79, unknown 11.4
1857 Female, age 85, left hemisphere 11.1
1854 Male, age 80, left hemisphere 11.0
2290 Female, age 72, unknown 10.8
1781 Male, age 74, unknown 10.4
2481 Female, age 94, left hemisphere 10.3
2289 Male, age 61, right hemisphere 10.2
Claustrum
nTPM: 10.9
1956 Male, age 74, unknown 11.4
2292 Female, age 85, both hemispheres 11.4
2392 Female, age 94, both hemispheres 11.2
2196 Female, age 79, unknown 10.9
2284 Female, age 91, both hemispheres 10.9
2491 Male, age 75, both hemispheres 10.9
2568 Male, age 61, both hemispheres 10.6
2645 Female, age 72, unknown 10.5
2198 Male, age 80, both hemispheres 10.4
Globus pallidus, externus
nTPM: 11.5
2395 Male, age 75, both hemispheres 12.5
1996 Male, age 80, right hemisphere 12.3
2772 Female, age 79, unknown 11.5
2567 Female, age 72, unknown 10.9
2646 Male, age 61, right hemisphere 10.3
Globus pallidus, internus
nTPM: 11.9
2287 Male, age 75, right hemisphere 12.8
2111 Female, age 85, right hemisphere 12.5
2778 Female, age 91, both hemispheres 12.4
2037 Male, age 80, right hemisphere 12.3
1818 Male, age 74, unknown 11.5
2566 Female, age 72, unknown 11.1
2483 Female, age 94, right hemisphere 10.8
Nucleus accumbens
nTPM: 11.5
2391 Female, age 94, left hemisphere 12.6
2824 Male, age 61, right hemisphere 11.9
2286 Male, age 75, left hemisphere 11.7
2698 Female, age 72, unknown 11.4
1856 Female, age 91, right hemisphere 11.2
2732 Male, age 80, right hemisphere 11.2
1806 Female, age 85, left hemisphere 11.0
1783 Male, age 74, unknown 10.8
Nucleus basalis of Meynert
nTPM: 10.6
2821 Male, age 75, both hemispheres 11.2
2393 Male, age 80, right hemisphere 11.0
2484 Female, age 94, left hemisphere 10.6
2569 Male, age 61, both hemispheres 9.7
Nucleus of the diagonal band
nTPM: 10.9
1979 Male, age 74, unknown 11.2
2029 Male, age 61, right hemisphere 11.1
1812 Female, age 91, both hemispheres 11.0
2195 Female, age 85, both hemispheres 10.7
2775 Male, age 80, right hemisphere 10.7
Olfactory tubercle
nTPM: 10.7
1998 Female, age 91, both hemispheres 11.2
1846 Male, age 80, right hemisphere 10.7
2487 Female, age 94, left hemisphere 10.7
2856 Male, age 75, right hemisphere 10.4
Putamen
nTPM: 11.2
2466 Female, age 79, unknown 12.7
1937 Female, age 91, right hemisphere 11.3
1829 Male, age 74, unknown 11.2
1838 Male, age 80, right hemisphere 11.0
2482 Female, age 94, left hemisphere 11.0
2489 Female, age 72, unknown 10.6
2647 Male, age 75, left hemisphere 10.5
Septal nuclei
nTPM: 10.7
2031 Female, age 72, unknown 11.9
2629 Female, age 94, right hemisphere 11.0
2009 Female, age 91, both hemispheres 10.9
2394 Male, age 61, left hemisphere 10.7
1960 Male, age 74, unknown 10.5
2059 Female, age 85, both hemispheres 10.3
2199 Male, age 80, right hemisphere 9.7

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 10.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 10.3
Samples: 246

Max nTPM: 18.2
Min nTPM: 5.2
Std nTPM: 1.8
Median nTPM: 10.3
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 18.2
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 16.5
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 16.5
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 16.1
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 16.0
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 15.8
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 15.7
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 15.6
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 14.7
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 14.0
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 13.4
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 10.3
Samples: 246

Max nTPM: 17.2
Min nTPM: 6.5
Std nTPM: 1.8
Median nTPM: 10.1
GTEX-1E2YA-0011-R6b-SM-CE6R2 50-59 years, male 17.2
GTEX-X4EP-0011-R6A-SM-3P629 60-69 years, female 17.0
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 16.1
GTEX-1EKGG-0011-R6a-SM-CL538 60-69 years, male 16.1
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 15.6
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 14.7
GTEX-1EN7A-0011-R6b-SM-9QEHW 40-49 years, male 14.7
GTEX-1CB4J-0011-R6b-SM-9WG7B 60-69 years, male 14.6
GTEX-11DXW-0011-R6a-SM-DO11N 40-49 years, male 14.5
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 14.2
GTEX-QDT8-0011-R6A-SM-32PKI 30-39 years, female 13.7
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Brain - Putamen (basal ganglia)
Average nTPM: 10.7
Samples: 205

Max nTPM: 18.3
Min nTPM: 6.1
Std nTPM: 1.9
Median nTPM: 10.6
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 18.3
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 17.1
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 16.4
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 16.1
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 16.1
GTEX-RU72-0011-R7A-SM-2TF5U 50-59 years, female 16.0
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 15.6
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 15.3
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 14.5
GTEX-1313W-0011-R7b-SM-5DUWL 50-59 years, female 14.2
GTEX-1GMR8-0011-R7b-SM-CJI2I 50-59 years, female 14.2
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 67.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 42.0
FF:10164-103B2 76 years, female 42.0
Globus pallidus
Scaled Tags Per Million: 67.0
FF:10175-103C4 60 years, female 88.4
FF:10161-103A8 76 years, female 45.7
Nucleus accumbens
Scaled Tags Per Million: 51.5
FF:10037-101F1 23-56 years, mixed 51.5
Putamen
Scaled Tags Per Million: 58.0
FF:10176-103C5 60 years, female 58.0

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 46.6
Pig sample Sample description nTPM
Caudate
nTPM: 35.4
Samples: 4

Max nTPM: 39.2
Min nTPM: 29.8
Sample A Female 39.2
Sample B Female 33.6
Sample C Male 39.1
Sample D Male 29.8
Putamen
nTPM: 46.6
Samples: 4

Max nTPM: 58.0
Min nTPM: 36.0
Sample A Female 48.9
Sample B Female 36.0
Sample C Male 58.0
Sample D Male 43.6
Septum
nTPM: 41.3
Samples: 4

Max nTPM: 44.2
Min nTPM: 36.6
Sample A Female 44.2
Sample B Female 36.6
Sample C Male 44.1
Sample D Male 40.4
Ventral pallidum
nTPM: 39.3
Samples: 4

Max nTPM: 41.1
Min nTPM: 37.9
Sample A Female 37.9
Sample B Female 38.2
Sample C Male 39.9
Sample D Male 41.1

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 18.0
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 17.1
Samples: 4

Max nTPM: 18.3
Min nTPM: 16.1
Sample A Male 18.3
Sample B Male 16.8
Sample C Female 17.0
Sample D Female 16.1
Septum
nTPM: 18.0
Samples: 4

Max nTPM: 20.3
Min nTPM: 16.0
Sample A Male 16.0
Sample B Male 20.3
Sample C Female 19.0
Sample D Female 16.7
Ventral forebrain
nTPM: 14.1
Samples: 4

Max nTPM: 15.7
Min nTPM: 13.0
Sample A Male 13.9
Sample B Male 13.0
Sample C Female 15.7
Sample D Female 13.7

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 1.6
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 1.5
69117008 Antisense, RP_050321_01_E11, Mouse strain C57BL/6J (56 days, male) 1.5
Pallidum
Expression energy: 1.6
69117008 Antisense, RP_050321_01_E11, Mouse strain C57BL/6J (56 days, male) 1.6

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The Human Protein Atlas

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