BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Medium
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:50.6 nTPM
HPA:50.6 nTPM
GTEx:51.4 nTPM
FANTOM5:48.6 Scaled Tags Per Million
Pig:81.9 nTPM
Mouse:122.0 nTPM
Allen mouse:5.5 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA003591Antibody HPA003639
Glial cells MediumNot detected
Neuronal cells -Low





BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 50.6
Sample id Sample description nTPM
Caudate nucleus
nTPM: 48.2
2846 Female, age 79, unknown 54.1
2290 Female, age 72, unknown 50.5
2288 Male, age 75, left hemisphere 49.8
2481 Female, age 94, left hemisphere 49.4
1857 Female, age 85, left hemisphere 48.9
1854 Male, age 80, left hemisphere 45.8
2289 Male, age 61, right hemisphere 43.8
1781 Male, age 74, unknown 43.1
Claustrum
nTPM: 42.1
2392 Female, age 94, both hemispheres 47.4
2491 Male, age 75, both hemispheres 46.4
1956 Male, age 74, unknown 43.2
2196 Female, age 79, unknown 43.0
2292 Female, age 85, both hemispheres 42.7
2198 Male, age 80, both hemispheres 40.0
2568 Male, age 61, both hemispheres 39.7
2645 Female, age 72, unknown 38.6
2284 Female, age 91, both hemispheres 38.3
Globus pallidus, externus
nTPM: 50.3
1996 Male, age 80, right hemisphere 53.7
2395 Male, age 75, both hemispheres 50.0
2567 Female, age 72, unknown 49.5
2646 Male, age 61, right hemisphere 49.3
2772 Female, age 79, unknown 49.2
Globus pallidus, internus
nTPM: 50.6
2483 Female, age 94, right hemisphere 59.4
2287 Male, age 75, right hemisphere 54.4
2037 Male, age 80, right hemisphere 49.6
1818 Male, age 74, unknown 48.8
2778 Female, age 91, both hemispheres 48.6
2111 Female, age 85, right hemisphere 47.5
2566 Female, age 72, unknown 45.6
Nucleus accumbens
nTPM: 46.5
2698 Female, age 72, unknown 50.5
2391 Female, age 94, left hemisphere 49.8
2286 Male, age 75, left hemisphere 48.4
1806 Female, age 85, left hemisphere 48.3
1856 Female, age 91, right hemisphere 45.1
1783 Male, age 74, unknown 44.6
2824 Male, age 61, right hemisphere 43.7
2732 Male, age 80, right hemisphere 41.6
Nucleus basalis of Meynert
nTPM: 47.6
2569 Male, age 61, both hemispheres 52.5
2484 Female, age 94, left hemisphere 48.3
2393 Male, age 80, right hemisphere 45.8
2821 Male, age 75, both hemispheres 43.8
Nucleus of the diagonal band
nTPM: 41.5
1812 Female, age 91, both hemispheres 43.2
1979 Male, age 74, unknown 42.9
2195 Female, age 85, both hemispheres 42.1
2775 Male, age 80, right hemisphere 41.0
2029 Male, age 61, right hemisphere 38.3
Olfactory tubercle
nTPM: 41.1
1846 Male, age 80, right hemisphere 44.2
2856 Male, age 75, right hemisphere 42.1
1998 Female, age 91, both hemispheres 40.5
2487 Female, age 94, left hemisphere 37.8
Putamen
nTPM: 48.1
2482 Female, age 94, left hemisphere 51.5
1838 Male, age 80, right hemisphere 49.3
2466 Female, age 79, unknown 49.3
2647 Male, age 75, left hemisphere 48.6
1829 Male, age 74, unknown 47.2
2489 Female, age 72, unknown 45.7
1937 Female, age 91, right hemisphere 45.0
Septal nuclei
nTPM: 41.8
2199 Male, age 80, right hemisphere 43.1
1960 Male, age 74, unknown 42.6
2031 Female, age 72, unknown 42.6
2394 Male, age 61, left hemisphere 42.2
2629 Female, age 94, right hemisphere 41.6
2009 Female, age 91, both hemispheres 40.7
2059 Female, age 85, both hemispheres 39.8

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 51.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 44.9
Samples: 246

Max nTPM: 76.5
Min nTPM: 32.2
Std nTPM: 7.2
Median nTPM: 44.3
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 76.5
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 70.8
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 69.1
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 67.3
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 67.0
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 65.0
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 62.9
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 61.7
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 60.6
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 58.6
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 58.4
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 40.9
Samples: 246

Max nTPM: 67.0
Min nTPM: 22.8
Std nTPM: 6.8
Median nTPM: 39.6
GTEX-131XW-0011-R6b-SM-5K7XY 50-59 years, female 67.0
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 63.8
GTEX-1I1HK-0011-R6b-SM-CM2T9 60-69 years, male 63.7
GTEX-YJ89-0011-R6a-SM-4V6GN 60-69 years, male 60.4
GTEX-ZV68-0011-R6a-SM-51MSR 50-59 years, female 59.8
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 59.3
GTEX-1LVA9-0011-R6a-SM-EYYWH 50-59 years, male 57.4
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 56.4
GTEX-X261-0011-R6B-SM-4E3J8 50-59 years, male 56.3
GTEX-1H3O1-0011-R6b-SM-CL54U 60-69 years, male 56.2
GTEX-16Z82-0011-R6a-SM-7IGLV 60-69 years, male 55.6
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Brain - Putamen (basal ganglia)
Average nTPM: 51.4
Samples: 205

Max nTPM: 95.9
Min nTPM: 32.8
Std nTPM: 9.8
Median nTPM: 49.9
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 95.9
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 85.9
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 85.8
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 84.4
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 82.0
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 78.1
GTEX-ZXG5-0011-R7b-SM-57WCC 60-69 years, male 75.9
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 73.4
GTEX-NL3H-0011-R7a-SM-2I3G5 60-69 years, male 71.5
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 70.4
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 70.2
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 48.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 38.2
FF:10164-103B2 76 years, female 38.2
Globus pallidus
Scaled Tags Per Million: 46.8
FF:10175-103C4 60 years, female 52.0
FF:10161-103A8 76 years, female 41.5
Nucleus accumbens
Scaled Tags Per Million: 48.6
FF:10037-101F1 23-56 years, mixed 48.6
Putamen
Scaled Tags Per Million: 32.9
FF:10176-103C5 60 years, female 32.9

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 81.9
Pig sample Sample description nTPM
Caudate
nTPM: 80.6
Samples: 4

Max nTPM: 95.1
Min nTPM: 60.9
Sample A Female 60.9
Sample B Female 88.2
Sample C Male 95.1
Sample D Male 78.1
Putamen
nTPM: 82.0
Samples: 4

Max nTPM: 102.3
Min nTPM: 62.7
Sample A Female 62.7
Sample B Female 76.0
Sample C Male 102.3
Sample D Male 86.8
Septum
nTPM: 52.7
Samples: 4

Max nTPM: 61.0
Min nTPM: 44.7
Sample A Female 61.0
Sample B Female 58.2
Sample C Male 44.7
Sample D Male 46.9
Ventral pallidum
nTPM: 62.4
Samples: 4

Max nTPM: 67.4
Min nTPM: 53.6
Sample A Female 62.2
Sample B Female 66.5
Sample C Male 53.6
Sample D Male 67.4

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 122.0
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 122.0
Samples: 4

Max nTPM: 123.0
Min nTPM: 121.5
Sample A Male 121.9
Sample B Male 121.5
Sample C Female 121.7
Sample D Female 123.0
Septum
nTPM: 109.4
Samples: 4

Max nTPM: 115.6
Min nTPM: 102.5
Sample A Male 104.3
Sample B Male 115.1
Sample C Female 115.6
Sample D Female 102.5
Ventral forebrain
nTPM: 107.8
Samples: 4

Max nTPM: 111.8
Min nTPM: 101.3
Sample A Male 101.3
Sample B Male 111.8
Sample C Female 111.6
Sample D Female 106.5

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 5.5
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 5.5
583544 Antisense, RP_040831_02_F10, Mouse strain C57BL/6J (56 days, male) 10.3
74047910 Antisense, RP_051214_02_C07, Mouse strain C57BL/6J (56 days, male) 0.7
Pallidum
Expression energy: 4.2
583544 Antisense, RP_040831_02_F10, Mouse strain C57BL/6J (56 days, male) 7.5
74047910 Antisense, RP_051214_02_C07, Mouse strain C57BL/6J (56 days, male) 0.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
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