MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:45.5 nTPM
HPA:45.5 nTPM
GTEx:49.0 nTPM
FANTOM5:39.7 Scaled Tags Per Million
Pig:58.7 nTPM
Mouse:108.6 nTPM
Allen mouse:4.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 45.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 44.8
2666 Male, age 74, left hemisphere 49.6
2019 Male, age 18, unknown 46.9
1833 Male, age 53, unknown 45.3
2586 Male, age 75, left hemisphere 45.3
1830 Male, age 51, unknown 44.7
1870 Female, age 42, unknown 43.9
2219 Male, age 76, both hemispheres 43.5
2411 Female, age 72, unknown 43.5
1827 Male, age 72, unknown 42.9
2828 Female, age 72, unknown 42.3
Dorsal raphe nucleus
nTPM: 40.7
2016 Female, age 72, unknown 42.6
2750 Male, age 76, both hemispheres 42.4
1828 Male, age 53, unknown 41.3
2298 Female, age 72, unknown 39.0
2047 Male, age 72, unknown 38.2
Inferior colliculus
nTPM: 44.0
1890 Male, age 53, unknown 45.8
2849 Male, age 72, unknown 44.7
2097 Female, age 72, unknown 43.3
1848 Female, age 42, unknown 42.2
Median raphe nucleus
nTPM: 41.1
2220 Male, age 76, midline 41.1
Pedunculopontine tegmental nucleus
nTPM: 42.6
2334 Male, age 80, both hemispheres 45.3
1921 Female, age 85, both hemispheres 41.7
2338 Male, age 61, both hemispheres 40.8
Periaquaductal grey, anterior
nTPM: 39.3
2502 Female, age 75, unknown 41.5
1947 Male, age 18, unknown 39.3
1795 Male, age 51, unknown 36.9
Periaquaductal grey, dorsal
nTPM: 42.2
1840 Male, age 53, unknown 43.4
2464 Female, age 72, unknown 42.7
2850 Male, age 76, both hemispheres 41.5
1831 Male, age 72, unknown 41.0
Periaquaductal grey, lateral
nTPM: 38.4
2140 Male, age 76, both hemispheres 39.6
2053 Male, age 18, unknown 38.3
2272 Male, age 74, both hemispheres 37.5
Pretectal area
nTPM: 41.6
1817 Female, age 42, unknown 46.0
2007 Male, age 72, unknown 46.0
1815 Male, age 53, unknown 45.7
1816 Male, age 51, unknown 45.5
1944 Female, age 72, unknown 43.6
2316 Male, age 76, right hemisphere 40.7
2224 Female, age 72, unknown 39.0
2407 Male, age 75, both hemispheres 38.9
2825 Male, age 18, unknown 38.9
2667 Female, age 75, unknown 38.1
2273 Male, age 74, both hemispheres 35.7
Red nucleus
nTPM: 45.5
2785 Male, age 18, unknown 50.3
2503 Female, age 72, unknown 49.7
2588 Male, age 74, left hemisphere 46.9
1821 Female, age 72, unknown 46.7
1904 Male, age 53, unknown 45.4
2725 Female, age 75, unknown 45.3
1865 Male, age 51, unknown 45.0
1954 Female, age 42, unknown 44.1
2769 Male, age 72, unknown 43.6
2823 Male, age 76, right hemisphere 43.2
2584 Male, age 75, left hemisphere 43.0
2227 Male, age 72, unknown 42.4
Substantia nigra
nTPM: 44.7
2665 Male, age 74, both hemispheres 50.8
2241 Male, age 72, unknown 47.6
1889 Female, age 72, unknown 46.8
2699 Male, age 18, unknown 46.1
1851 Male, age 51, unknown 45.2
1916 Female, age 42, unknown 43.9
2409 Female, age 72, unknown 42.6
2583 Male, age 75, right hemisphere 42.2
2590 Female, age 75, unknown 41.5
1941 Male, age 53, unknown 40.2
Superior colliculus
nTPM: 43.1
2587 Male, age 74, left hemisphere 48.5
2668 Female, age 75, unknown 47.6
1995 Male, age 72, unknown 45.2
1913 Female, age 42, unknown 43.7
1895 Male, age 76, right hemisphere 42.8
1839 Male, age 51, unknown 42.6
2087 Female, age 72, unknown 41.9
1796 Male, age 53, unknown 40.6
2664 Male, age 75, both hemispheres 39.5
2261 Male, age 18, unknown 38.4
Ventral tegmental area
nTPM: 42.3
2223 Female, age 72, unknown 44.1
2410 Female, age 72, unknown 43.7
1915 Female, age 42, unknown 42.5
2218 Male, age 76, both hemispheres 41.7
1942 Male, age 51, unknown 41.1
2021 Male, age 53, unknown 40.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 49.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 49.0
Samples: 139

Max nTPM: 91.0
Min nTPM: 29.5
Std nTPM: 11.9
Median nTPM: 46.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 91.0
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 81.6
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 80.5
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 79.4
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 75.9
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 75.6
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 75.3
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 74.5
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 73.1
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 68.7
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 67.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 39.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 39.7
FF:10158-103A5 76 years, female 39.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 58.7
Pig sample Sample description nTPM
Midbrain
nTPM: 58.8
Samples: 4

Max nTPM: 61.6
Min nTPM: 56.9
Sample A Female 61.6
Sample B Female 57.3
Sample C Male 59.2
Sample D Male 56.9
Periaqueductal gray
nTPM: 52.5
Samples: 3

Max nTPM: 55.3
Min nTPM: 48.6
Sample B Female 53.7
Sample C Male 55.3
Sample D Male 48.6
Substantia nigra
nTPM: 57.2
Samples: 4

Max nTPM: 61.8
Min nTPM: 54.2
Sample A Female 61.8
Sample B Female 55.1
Sample C Male 54.2
Sample D Male 57.5
Superior colliculi
nTPM: 55.7
Samples: 4

Max nTPM: 67.3
Min nTPM: 42.6
Sample A Female 67.3
Sample B Female 42.6
Sample C Male 55.4
Sample D Male 57.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 108.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 108.6
Samples: 4

Max nTPM: 111.1
Min nTPM: 104.4
Sample A Male 104.4
Sample B Male 110.8
Sample C Female 111.1
Sample D Female 108.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.1
583544 Antisense, RP_040831_02_F10, Mouse strain C57BL/6J (56 days, male) 6.3
74047910 Antisense, RP_051214_02_C07, Mouse strain C57BL/6J (56 days, male) 1.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.