MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:26.6 nTPM
HPA:26.6 nTPM
GTEx:27.9 nTPM
FANTOM5:39.5 Scaled Tags Per Million
Pig:33.6 nTPM
Mouse:128.4 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 26.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 20.9
2586 Male, age 75, left hemisphere 24.0
2019 Male, age 18, unknown 23.8
2666 Male, age 74, left hemisphere 23.6
2828 Female, age 72, unknown 21.3
2219 Male, age 76, both hemispheres 20.3
1827 Male, age 72, unknown 20.0
2411 Female, age 72, unknown 19.9
1833 Male, age 53, unknown 19.6
1830 Male, age 51, unknown 19.1
1870 Female, age 42, unknown 17.1
Dorsal raphe nucleus
nTPM: 21.6
2047 Male, age 72, unknown 23.8
2298 Female, age 72, unknown 22.9
1828 Male, age 53, unknown 22.2
2750 Male, age 76, both hemispheres 22.2
2016 Female, age 72, unknown 16.8
Inferior colliculus
nTPM: 17.1
1890 Male, age 53, unknown 17.4
2849 Male, age 72, unknown 17.4
1848 Female, age 42, unknown 17.3
2097 Female, age 72, unknown 16.4
Median raphe nucleus
nTPM: 23.7
2220 Male, age 76, midline 23.7
Pedunculopontine tegmental nucleus
nTPM: 21.3
2334 Male, age 80, both hemispheres 23.9
2338 Male, age 61, both hemispheres 20.5
1921 Female, age 85, both hemispheres 19.3
Periaquaductal grey, anterior
nTPM: 21.8
1795 Male, age 51, unknown 23.2
1947 Male, age 18, unknown 22.1
2502 Female, age 75, unknown 20.0
Periaquaductal grey, dorsal
nTPM: 18.1
1840 Male, age 53, unknown 21.0
2464 Female, age 72, unknown 18.9
1831 Male, age 72, unknown 16.3
2850 Male, age 76, both hemispheres 16.1
Periaquaductal grey, lateral
nTPM: 16.6
2272 Male, age 74, both hemispheres 17.2
2053 Male, age 18, unknown 16.7
2140 Male, age 76, both hemispheres 15.9
Pretectal area
nTPM: 22.7
2007 Male, age 72, unknown 29.5
1816 Male, age 51, unknown 28.9
1944 Female, age 72, unknown 28.3
1817 Female, age 42, unknown 28.2
1815 Male, age 53, unknown 24.9
2667 Female, age 75, unknown 21.8
2825 Male, age 18, unknown 19.0
2407 Male, age 75, both hemispheres 18.2
2224 Female, age 72, unknown 18.1
2273 Male, age 74, both hemispheres 16.3
2316 Male, age 76, right hemisphere 16.1
Red nucleus
nTPM: 20.7
2584 Male, age 75, left hemisphere 26.5
2785 Male, age 18, unknown 24.0
2588 Male, age 74, left hemisphere 22.5
1821 Female, age 72, unknown 20.6
2503 Female, age 72, unknown 20.3
2725 Female, age 75, unknown 20.0
1904 Male, age 53, unknown 19.7
2769 Male, age 72, unknown 19.5
2227 Male, age 72, unknown 19.2
2823 Male, age 76, right hemisphere 19.1
1865 Male, age 51, unknown 18.5
1954 Female, age 42, unknown 18.5
Substantia nigra
nTPM: 26.6
1916 Female, age 42, unknown 34.7
2665 Male, age 74, both hemispheres 30.8
1851 Male, age 51, unknown 27.8
2583 Male, age 75, right hemisphere 27.4
2409 Female, age 72, unknown 26.7
2241 Male, age 72, unknown 26.5
1889 Female, age 72, unknown 23.7
2590 Female, age 75, unknown 23.1
1941 Male, age 53, unknown 22.9
2699 Male, age 18, unknown 22.7
Superior colliculus
nTPM: 20.9
2668 Female, age 75, unknown 26.3
2087 Female, age 72, unknown 26.2
2664 Male, age 75, both hemispheres 22.8
1796 Male, age 53, unknown 20.6
2261 Male, age 18, unknown 19.9
2587 Male, age 74, left hemisphere 19.4
1839 Male, age 51, unknown 19.2
1913 Female, age 42, unknown 18.8
1995 Male, age 72, unknown 17.9
1895 Male, age 76, right hemisphere 17.7
Ventral tegmental area
nTPM: 22.5
2410 Female, age 72, unknown 29.0
2218 Male, age 76, both hemispheres 24.4
1915 Female, age 42, unknown 24.3
1942 Male, age 51, unknown 19.7
2021 Male, age 53, unknown 19.6
2223 Female, age 72, unknown 18.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 27.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 27.9
Samples: 139

Max nTPM: 63.4
Min nTPM: 11.4
Std nTPM: 11.3
Median nTPM: 24.7
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 63.4
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 62.4
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 60.5
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 55.4
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 55.1
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 54.5
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 49.1
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 47.7
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 47.3
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 46.9
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 46.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 39.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 39.5
FF:10158-103A5 76 years, female 39.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 33.6
Pig sample Sample description nTPM
Midbrain
nTPM: 25.5
Samples: 4

Max nTPM: 31.4
Min nTPM: 19.5
Sample A Female 19.5
Sample B Female 25.2
Sample C Male 31.4
Sample D Male 25.7
Periaqueductal gray
nTPM: 21.4
Samples: 3

Max nTPM: 26.0
Min nTPM: 16.5
Sample B Female 21.7
Sample C Male 26.0
Sample D Male 16.5
Substantia nigra
nTPM: 33.6
Samples: 4

Max nTPM: 44.5
Min nTPM: 26.6
Sample A Female 36.3
Sample B Female 27.0
Sample C Male 44.5
Sample D Male 26.6
Superior colliculi
nTPM: 25.5
Samples: 4

Max nTPM: 30.1
Min nTPM: 22.7
Sample A Female 25.6
Sample B Female 22.7
Sample C Male 30.1
Sample D Male 23.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 128.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 128.4
Samples: 4

Max nTPM: 137.9
Min nTPM: 118.9
Sample A Male 130.9
Sample B Male 118.9
Sample C Female 125.7
Sample D Female 137.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
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