MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:68.4 nTPM
HPA:68.4 nTPM
GTEx:60.1 nTPM
FANTOM5:19.4 Scaled Tags Per Million
Pig:24.6 nTPM
Mouse:39.4 nTPM
Allen mouse:0.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 68.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 67.2
2586 Male, age 75, left hemisphere 70.5
2828 Female, age 72, unknown 68.7
2019 Male, age 18, unknown 68.6
1827 Male, age 72, unknown 67.3
1870 Female, age 42, unknown 67.1
2411 Female, age 72, unknown 66.9
2666 Male, age 74, left hemisphere 66.5
1833 Male, age 53, unknown 65.9
2219 Male, age 76, both hemispheres 65.4
1830 Male, age 51, unknown 65.2
Dorsal raphe nucleus
nTPM: 67.2
2298 Female, age 72, unknown 69.0
1828 Male, age 53, unknown 68.2
2047 Male, age 72, unknown 66.6
2750 Male, age 76, both hemispheres 66.5
2016 Female, age 72, unknown 65.8
Inferior colliculus
nTPM: 67.2
1890 Male, age 53, unknown 68.6
2097 Female, age 72, unknown 68.5
2849 Male, age 72, unknown 66.7
1848 Female, age 42, unknown 65.2
Median raphe nucleus
nTPM: 67.9
2220 Male, age 76, midline 67.9
Pedunculopontine tegmental nucleus
nTPM: 66.0
2334 Male, age 80, both hemispheres 66.5
1921 Female, age 85, both hemispheres 66.2
2338 Male, age 61, both hemispheres 65.2
Periaquaductal grey, anterior
nTPM: 68.2
2502 Female, age 75, unknown 68.8
1795 Male, age 51, unknown 68.0
1947 Male, age 18, unknown 67.8
Periaquaductal grey, dorsal
nTPM: 66.3
1831 Male, age 72, unknown 68.1
2850 Male, age 76, both hemispheres 66.7
1840 Male, age 53, unknown 65.9
2464 Female, age 72, unknown 64.6
Periaquaductal grey, lateral
nTPM: 66.7
2053 Male, age 18, unknown 67.2
2272 Male, age 74, both hemispheres 66.5
2140 Male, age 76, both hemispheres 66.3
Pretectal area
nTPM: 67.6
1817 Female, age 42, unknown 69.9
2007 Male, age 72, unknown 69.6
2667 Female, age 75, unknown 68.6
1816 Male, age 51, unknown 68.5
1944 Female, age 72, unknown 68.5
2273 Male, age 74, both hemispheres 67.4
1815 Male, age 53, unknown 67.3
2224 Female, age 72, unknown 66.2
2407 Male, age 75, both hemispheres 66.0
2316 Male, age 76, right hemisphere 65.8
2825 Male, age 18, unknown 65.8
Red nucleus
nTPM: 68.3
1821 Female, age 72, unknown 70.6
2769 Male, age 72, unknown 69.3
2584 Male, age 75, left hemisphere 69.0
2785 Male, age 18, unknown 68.7
2588 Male, age 74, left hemisphere 68.5
1865 Male, age 51, unknown 68.4
2503 Female, age 72, unknown 68.4
1904 Male, age 53, unknown 68.2
2725 Female, age 75, unknown 68.0
2823 Male, age 76, right hemisphere 67.4
1954 Female, age 42, unknown 67.0
2227 Male, age 72, unknown 66.6
Substantia nigra
nTPM: 68.4
1916 Female, age 42, unknown 72.6
1889 Female, age 72, unknown 70.8
1851 Male, age 51, unknown 70.5
1941 Male, age 53, unknown 69.5
2699 Male, age 18, unknown 68.4
2665 Male, age 74, both hemispheres 67.4
2590 Female, age 75, unknown 67.1
2583 Male, age 75, right hemisphere 67.0
2241 Male, age 72, unknown 66.5
2409 Female, age 72, unknown 64.2
Superior colliculus
nTPM: 67.3
2664 Male, age 75, both hemispheres 69.2
2587 Male, age 74, left hemisphere 68.5
1913 Female, age 42, unknown 68.3
1895 Male, age 76, right hemisphere 67.3
2668 Female, age 75, unknown 67.2
2261 Male, age 18, unknown 67.0
1995 Male, age 72, unknown 66.8
1796 Male, age 53, unknown 66.7
2087 Female, age 72, unknown 66.2
1839 Male, age 51, unknown 66.1
Ventral tegmental area
nTPM: 68.4
1915 Female, age 42, unknown 69.1
1942 Male, age 51, unknown 69.0
2218 Male, age 76, both hemispheres 69.0
2410 Female, age 72, unknown 68.3
2223 Female, age 72, unknown 67.8
2021 Male, age 53, unknown 67.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 60.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 60.1
Samples: 139

Max nTPM: 131.6
Min nTPM: 28.1
Std nTPM: 15.0
Median nTPM: 57.2
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 131.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 130.6
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 111.3
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 92.6
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 90.8
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 89.2
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 88.8
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 83.7
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 82.2
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 81.8
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 80.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 19.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 19.4
FF:10158-103A5 76 years, female 19.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 24.6
Pig sample Sample description nTPM
Midbrain
nTPM: 21.9
Samples: 4

Max nTPM: 23.6
Min nTPM: 18.3
Sample A Female 23.6
Sample B Female 18.3
Sample C Male 23.1
Sample D Male 22.4
Periaqueductal gray
nTPM: 15.4
Samples: 3

Max nTPM: 16.4
Min nTPM: 14.3
Sample B Female 15.6
Sample C Male 16.4
Sample D Male 14.3
Substantia nigra
nTPM: 19.1
Samples: 4

Max nTPM: 21.4
Min nTPM: 16.8
Sample A Female 21.4
Sample B Female 16.8
Sample C Male 18.9
Sample D Male 19.1
Superior colliculi
nTPM: 24.6
Samples: 4

Max nTPM: 24.8
Min nTPM: 24.4
Sample A Female 24.8
Sample B Female 24.7
Sample C Male 24.6
Sample D Male 24.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 39.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 39.4
Samples: 4

Max nTPM: 52.0
Min nTPM: 33.2
Sample A Male 52.0
Sample B Male 36.7
Sample C Female 33.2
Sample D Female 35.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.6
74819464 Antisense, RP_060315_02_F06, Mouse strain C57BL/6J (56 days, male) 0.7
69262249 Antisense, RP_050301_01_H09, Mouse strain C57BL/6J (56 days, male) 0.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.