MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:22.7 nTPM
HPA:22.7 nTPM
GTEx:13.3 nTPM
FANTOM5:4.8 Scaled Tags Per Million
Pig:24.6 nTPM
Mouse:27.3 nTPM
Allen mouse:3.0 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 22.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 22.0
2586 Male, age 75, left hemisphere 23.6
2666 Male, age 74, left hemisphere 23.2
2219 Male, age 76, both hemispheres 22.8
2019 Male, age 18, unknown 22.3
1833 Male, age 53, unknown 22.2
2411 Female, age 72, unknown 22.0
1830 Male, age 51, unknown 21.5
1870 Female, age 42, unknown 21.0
2828 Female, age 72, unknown 20.8
1827 Male, age 72, unknown 20.4
Dorsal raphe nucleus
nTPM: 20.4
1828 Male, age 53, unknown 21.2
2750 Male, age 76, both hemispheres 21.1
2047 Male, age 72, unknown 20.8
2016 Female, age 72, unknown 19.8
2298 Female, age 72, unknown 19.0
Inferior colliculus
nTPM: 19.9
2849 Male, age 72, unknown 20.8
1890 Male, age 53, unknown 19.9
1848 Female, age 42, unknown 19.7
2097 Female, age 72, unknown 19.2
Median raphe nucleus
nTPM: 21.7
2220 Male, age 76, midline 21.7
Pedunculopontine tegmental nucleus
nTPM: 20.9
2338 Male, age 61, both hemispheres 22.1
2334 Male, age 80, both hemispheres 20.6
1921 Female, age 85, both hemispheres 20.0
Periaquaductal grey, anterior
nTPM: 21.5
1947 Male, age 18, unknown 21.6
2502 Female, age 75, unknown 21.5
1795 Male, age 51, unknown 21.4
Periaquaductal grey, dorsal
nTPM: 19.9
2850 Male, age 76, both hemispheres 20.6
1831 Male, age 72, unknown 20.5
2464 Female, age 72, unknown 19.4
1840 Male, age 53, unknown 19.3
Periaquaductal grey, lateral
nTPM: 19.3
2053 Male, age 18, unknown 19.5
2140 Male, age 76, both hemispheres 19.4
2272 Male, age 74, both hemispheres 19.2
Pretectal area
nTPM: 20.2
2007 Male, age 72, unknown 21.4
1817 Female, age 42, unknown 21.2
1815 Male, age 53, unknown 21.1
1944 Female, age 72, unknown 21.1
1816 Male, age 51, unknown 20.8
2407 Male, age 75, both hemispheres 20.5
2667 Female, age 75, unknown 20.4
2825 Male, age 18, unknown 19.5
2224 Female, age 72, unknown 18.8
2316 Male, age 76, right hemisphere 18.7
2273 Male, age 74, both hemispheres 18.5
Red nucleus
nTPM: 22.7
1865 Male, age 51, unknown 23.6
2584 Male, age 75, left hemisphere 23.4
2823 Male, age 76, right hemisphere 23.4
2588 Male, age 74, left hemisphere 23.3
1954 Female, age 42, unknown 23.1
2769 Male, age 72, unknown 23.1
2503 Female, age 72, unknown 22.9
1821 Female, age 72, unknown 22.1
1904 Male, age 53, unknown 22.1
2227 Male, age 72, unknown 22.1
2785 Male, age 18, unknown 21.4
2725 Female, age 75, unknown 21.3
Substantia nigra
nTPM: 22.0
1916 Female, age 42, unknown 24.0
2699 Male, age 18, unknown 23.5
2665 Male, age 74, both hemispheres 23.1
2583 Male, age 75, right hemisphere 22.0
1941 Male, age 53, unknown 21.8
1851 Male, age 51, unknown 21.7
2590 Female, age 75, unknown 21.6
2241 Male, age 72, unknown 20.8
2409 Female, age 72, unknown 20.6
1889 Female, age 72, unknown 20.4
Superior colliculus
nTPM: 21.0
2664 Male, age 75, both hemispheres 22.6
2668 Female, age 75, unknown 22.3
1913 Female, age 42, unknown 21.3
1796 Male, age 53, unknown 21.0
1895 Male, age 76, right hemisphere 21.0
2261 Male, age 18, unknown 20.9
1995 Male, age 72, unknown 20.3
2587 Male, age 74, left hemisphere 20.3
1839 Male, age 51, unknown 20.2
2087 Female, age 72, unknown 20.2
Ventral tegmental area
nTPM: 22.0
2223 Female, age 72, unknown 22.5
2218 Male, age 76, both hemispheres 22.4
2410 Female, age 72, unknown 22.1
1915 Female, age 42, unknown 22.0
1942 Male, age 51, unknown 21.8
2021 Male, age 53, unknown 20.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 13.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 13.3
Samples: 139

Max nTPM: 20.4
Min nTPM: 8.8
Std nTPM: 2.1
Median nTPM: 13.1
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 20.4
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 18.3
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 18.1
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 18.0
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 17.9
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 17.9
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 17.8
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 17.5
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 17.1
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 16.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 16.3
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 4.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 4.8
FF:10158-103A5 76 years, female 4.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 24.6
Pig sample Sample description nTPM
Midbrain
nTPM: 24.7
Samples: 4

Max nTPM: 44.8
Min nTPM: 14.9
Sample A Female 44.8
Sample B Female 21.5
Sample C Male 17.4
Sample D Male 14.9
Periaqueductal gray
nTPM: 19.1
Samples: 3

Max nTPM: 19.4
Min nTPM: 19.0
Sample B Female 19.0
Sample C Male 19.0
Sample D Male 19.4
Substantia nigra
nTPM: 24.4
Samples: 4

Max nTPM: 34.2
Min nTPM: 18.7
Sample A Female 20.4
Sample B Female 18.7
Sample C Male 24.4
Sample D Male 34.2
Superior colliculi
nTPM: 20.1
Samples: 4

Max nTPM: 23.5
Min nTPM: 16.1
Sample A Female 17.4
Sample B Female 16.1
Sample C Male 23.4
Sample D Male 23.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 27.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 27.4
Samples: 4

Max nTPM: 29.1
Min nTPM: 26.2
Sample A Male 29.1
Sample B Male 26.2
Sample C Female 26.7
Sample D Female 27.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.0
73584831 Antisense, RP_051206_01_C04, Mouse strain C57BL/6J (56 days, male) 3.0

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.