MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:86.6 nTPM
HPA:86.6 nTPM
GTEx:112.7 nTPM
FANTOM5:135.8 Scaled Tags Per Million
Pig:127.9 nTPM
Mouse:160.8 nTPM
Allen mouse:5.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 86.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 81.6
2586 Male, age 75, left hemisphere 93.5
2411 Female, age 72, unknown 86.9
1833 Male, age 53, unknown 84.6
2828 Female, age 72, unknown 84.5
2666 Male, age 74, left hemisphere 84.2
2019 Male, age 18, unknown 80.5
1870 Female, age 42, unknown 80.3
1830 Male, age 51, unknown 78.4
1827 Male, age 72, unknown 75.6
2219 Male, age 76, both hemispheres 67.2
Dorsal raphe nucleus
nTPM: 76.2
2016 Female, age 72, unknown 80.1
2750 Male, age 76, both hemispheres 79.3
2047 Male, age 72, unknown 78.8
1828 Male, age 53, unknown 75.9
2298 Female, age 72, unknown 67.0
Inferior colliculus
nTPM: 77.3
1848 Female, age 42, unknown 81.5
2849 Male, age 72, unknown 78.0
1890 Male, age 53, unknown 77.6
2097 Female, age 72, unknown 72.2
Median raphe nucleus
nTPM: 69.5
2220 Male, age 76, midline 69.5
Pedunculopontine tegmental nucleus
nTPM: 71.9
2334 Male, age 80, both hemispheres 77.4
1921 Female, age 85, both hemispheres 76.1
2338 Male, age 61, both hemispheres 62.4
Periaquaductal grey, anterior
nTPM: 72.3
2502 Female, age 75, unknown 77.4
1947 Male, age 18, unknown 74.6
1795 Male, age 51, unknown 64.9
Periaquaductal grey, dorsal
nTPM: 71.2
1840 Male, age 53, unknown 74.1
1831 Male, age 72, unknown 73.5
2464 Female, age 72, unknown 71.1
2850 Male, age 76, both hemispheres 66.2
Periaquaductal grey, lateral
nTPM: 66.8
2053 Male, age 18, unknown 73.5
2140 Male, age 76, both hemispheres 64.3
2272 Male, age 74, both hemispheres 62.5
Pretectal area
nTPM: 75.5
1817 Female, age 42, unknown 87.3
1815 Male, age 53, unknown 85.3
1944 Female, age 72, unknown 84.9
2007 Male, age 72, unknown 80.1
1816 Male, age 51, unknown 77.4
2316 Male, age 76, right hemisphere 74.3
2825 Male, age 18, unknown 72.5
2407 Male, age 75, both hemispheres 70.3
2667 Female, age 75, unknown 68.8
2273 Male, age 74, both hemispheres 65.1
2224 Female, age 72, unknown 64.7
Red nucleus
nTPM: 86.6
1821 Female, age 72, unknown 101.5
2588 Male, age 74, left hemisphere 93.0
2503 Female, age 72, unknown 90.7
1865 Male, age 51, unknown 89.6
2769 Male, age 72, unknown 86.8
2584 Male, age 75, left hemisphere 86.1
1954 Female, age 42, unknown 85.5
1904 Male, age 53, unknown 84.5
2227 Male, age 72, unknown 83.3
2785 Male, age 18, unknown 81.4
2725 Female, age 75, unknown 78.8
2823 Male, age 76, right hemisphere 78.5
Substantia nigra
nTPM: 80.2
1889 Female, age 72, unknown 86.4
2583 Male, age 75, right hemisphere 82.3
2590 Female, age 75, unknown 82.2
2665 Male, age 74, both hemispheres 82.1
1851 Male, age 51, unknown 80.9
2699 Male, age 18, unknown 80.4
1916 Female, age 42, unknown 79.0
2409 Female, age 72, unknown 78.3
2241 Male, age 72, unknown 76.7
1941 Male, age 53, unknown 73.9
Superior colliculus
nTPM: 79.3
2668 Female, age 75, unknown 85.1
1895 Male, age 76, right hemisphere 84.8
1839 Male, age 51, unknown 84.7
1913 Female, age 42, unknown 82.9
2664 Male, age 75, both hemispheres 82.6
2587 Male, age 74, left hemisphere 81.3
1995 Male, age 72, unknown 77.7
2261 Male, age 18, unknown 73.8
1796 Male, age 53, unknown 73.0
2087 Female, age 72, unknown 67.4
Ventral tegmental area
nTPM: 76.9
2410 Female, age 72, unknown 94.6
1915 Female, age 42, unknown 76.8
1942 Male, age 51, unknown 76.2
2021 Male, age 53, unknown 73.2
2223 Female, age 72, unknown 71.5
2218 Male, age 76, both hemispheres 69.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 112.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 112.7
Samples: 139

Max nTPM: 205.0
Min nTPM: 49.8
Std nTPM: 33.5
Median nTPM: 106.4
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 205.0
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 198.9
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 194.0
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 193.2
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 192.8
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 186.2
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 180.8
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 176.5
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 174.4
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 174.2
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 173.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 135.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 135.8
FF:10158-103A5 76 years, female 135.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 127.9
Pig sample Sample description nTPM
Midbrain
nTPM: 127.9
Samples: 4

Max nTPM: 190.8
Min nTPM: 101.9
Sample A Female 190.8
Sample B Female 109.8
Sample C Male 109.0
Sample D Male 101.9
Periaqueductal gray
nTPM: 93.6
Samples: 3

Max nTPM: 103.4
Min nTPM: 83.3
Sample B Female 103.4
Sample C Male 94.2
Sample D Male 83.3
Substantia nigra
nTPM: 113.7
Samples: 4

Max nTPM: 135.2
Min nTPM: 88.7
Sample A Female 121.0
Sample B Female 88.7
Sample C Male 110.0
Sample D Male 135.2
Superior colliculi
nTPM: 108.4
Samples: 4

Max nTPM: 135.0
Min nTPM: 73.6
Sample A Female 115.7
Sample B Female 73.6
Sample C Male 109.3
Sample D Male 135.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 160.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 160.8
Samples: 4

Max nTPM: 166.1
Min nTPM: 154.5
Sample A Male 154.5
Sample B Male 157.4
Sample C Female 166.1
Sample D Female 165.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 5.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.7
1527 Antisense, RP_Baylor_253965, Mouse strain C57BL/6J (56 days, male) 5.7
1526 Antisense, RP_Baylor_253965, Mouse strain C57BL/6J (56 days, male) 3.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.