MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:36.5 nTPM
HPA:36.5 nTPM
GTEx:33.4 nTPM
FANTOM5:11.8 Scaled Tags Per Million
Pig:0.0 nTPM
Mouse:68.4 nTPM
Allen mouse:11.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 36.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 32.0
1827 Male, age 72, unknown 36.8
2411 Female, age 72, unknown 35.4
2219 Male, age 76, both hemispheres 33.6
2586 Male, age 75, left hemisphere 33.2
2828 Female, age 72, unknown 32.2
2666 Male, age 74, left hemisphere 31.3
1833 Male, age 53, unknown 30.6
1870 Female, age 42, unknown 29.5
2019 Male, age 18, unknown 29.2
1830 Male, age 51, unknown 28.1
Dorsal raphe nucleus
nTPM: 33.1
2298 Female, age 72, unknown 38.3
2047 Male, age 72, unknown 34.4
1828 Male, age 53, unknown 32.8
2750 Male, age 76, both hemispheres 32.5
2016 Female, age 72, unknown 27.6
Inferior colliculus
nTPM: 31.0
2097 Female, age 72, unknown 34.6
2849 Male, age 72, unknown 30.5
1848 Female, age 42, unknown 29.7
1890 Male, age 53, unknown 29.1
Median raphe nucleus
nTPM: 36.5
2220 Male, age 76, midline 36.5
Pedunculopontine tegmental nucleus
nTPM: 32.6
1921 Female, age 85, both hemispheres 38.2
2334 Male, age 80, both hemispheres 31.4
2338 Male, age 61, both hemispheres 28.1
Periaquaductal grey, anterior
nTPM: 32.4
1947 Male, age 18, unknown 33.5
1795 Male, age 51, unknown 33.1
2502 Female, age 75, unknown 30.6
Periaquaductal grey, dorsal
nTPM: 29.8
1840 Male, age 53, unknown 32.4
2464 Female, age 72, unknown 30.1
1831 Male, age 72, unknown 29.1
2850 Male, age 76, both hemispheres 27.4
Periaquaductal grey, lateral
nTPM: 27.1
2053 Male, age 18, unknown 28.6
2272 Male, age 74, both hemispheres 26.4
2140 Male, age 76, both hemispheres 26.3
Pretectal area
nTPM: 32.8
1816 Male, age 51, unknown 37.9
1817 Female, age 42, unknown 37.0
2007 Male, age 72, unknown 36.3
1944 Female, age 72, unknown 36.2
2667 Female, age 75, unknown 34.9
1815 Male, age 53, unknown 34.5
2224 Female, age 72, unknown 32.2
2825 Male, age 18, unknown 31.6
2407 Male, age 75, both hemispheres 27.3
2316 Male, age 76, right hemisphere 26.9
2273 Male, age 74, both hemispheres 26.1
Red nucleus
nTPM: 28.6
2725 Female, age 75, unknown 33.5
1821 Female, age 72, unknown 32.4
2588 Male, age 74, left hemisphere 30.4
2584 Male, age 75, left hemisphere 30.3
1954 Female, age 42, unknown 28.9
2503 Female, age 72, unknown 27.7
2823 Male, age 76, right hemisphere 27.7
2785 Male, age 18, unknown 27.5
2769 Male, age 72, unknown 27.1
2227 Male, age 72, unknown 26.8
1904 Male, age 53, unknown 26.3
1865 Male, age 51, unknown 25.2
Substantia nigra
nTPM: 35.8
1916 Female, age 42, unknown 45.3
1851 Male, age 51, unknown 38.9
2241 Male, age 72, unknown 37.8
1941 Male, age 53, unknown 37.3
1889 Female, age 72, unknown 36.9
2665 Male, age 74, both hemispheres 36.3
2699 Male, age 18, unknown 34.1
2409 Female, age 72, unknown 30.8
2583 Male, age 75, right hemisphere 30.8
2590 Female, age 75, unknown 29.6
Superior colliculus
nTPM: 30.0
1796 Male, age 53, unknown 34.6
2087 Female, age 72, unknown 32.7
2261 Male, age 18, unknown 32.7
1895 Male, age 76, right hemisphere 31.5
1839 Male, age 51, unknown 30.1
2668 Female, age 75, unknown 29.7
2664 Male, age 75, both hemispheres 29.6
2587 Male, age 74, left hemisphere 28.6
1913 Female, age 42, unknown 25.6
1995 Male, age 72, unknown 24.6
Ventral tegmental area
nTPM: 34.1
1915 Female, age 42, unknown 38.7
2410 Female, age 72, unknown 38.5
2218 Male, age 76, both hemispheres 36.2
1942 Male, age 51, unknown 33.4
2223 Female, age 72, unknown 29.0
2021 Male, age 53, unknown 28.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 33.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 33.4
Samples: 139

Max nTPM: 85.4
Min nTPM: 12.2
Std nTPM: 14.1
Median nTPM: 30.2
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 85.4
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 79.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 77.2
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 72.8
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 67.9
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 66.8
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 65.2
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 60.8
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 57.7
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 57.6
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 57.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 11.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 11.8
FF:10158-103A5 76 years, female 11.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 0.0
Pig sample Sample description nTPM
Midbrain
nTPM: 0.0
Samples: 4

Max nTPM: 0.0
Min nTPM: 0.0
Sample A Female 0.0
Sample B Female 0.0
Sample C Male 0.0
Sample D Male 0.0
Periaqueductal gray
nTPM: 0.0
Samples: 3

Max nTPM: 0.0
Min nTPM: 0.0
Sample B Female 0.0
Sample C Male 0.0
Sample D Male 0.0
Substantia nigra
nTPM: 0.0
Samples: 4

Max nTPM: 0.0
Min nTPM: 0.0
Sample A Female 0.0
Sample B Female 0.0
Sample C Male 0.0
Sample D Male 0.0
Superior colliculi
nTPM: 0.0
Samples: 4

Max nTPM: 0.0
Min nTPM: 0.0
Sample A Female 0.0
Sample B Female 0.0
Sample C Male 0.0
Sample D Male 0.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 68.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 68.4
Samples: 4

Max nTPM: 71.4
Min nTPM: 65.0
Sample A Male 68.9
Sample B Male 71.4
Sample C Female 65.0
Sample D Female 68.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 11.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 11.5
69059970 Antisense, RP_050317_04_H03, Mouse strain C57BL/6J (56 days, male) 11.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.