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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:92.9 nTPM
HPA:92.9 nTPM
GTEx:111.8 nTPM
FANTOM5:104.5 Scaled Tags Per Million
Pig:95.2 nTPM
Mouse:51.9 nTPM
Allen mouse:16.6 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 92.9
Sample id Sample description nTPM
Amygdala
nTPM: 65.1
1987 Female, age 91, left hemisphere 72.9
2517 Female, age 94, left hemisphere 72.2
2814 Male, age 76, right hemisphere 64.3
2514 Male, age 75, right hemisphere 63.7
2695 Female, age 67, right hemisphere 52.5
Basal amygdala
nTPM: 84.8
2685 Female, age 94, left hemisphere 97.8
2827 Female, age 67, right hemisphere 96.9
2243 Female, age 91, right hemisphere 90.9
2609 Male, age 75, right hemisphere 79.7
2110 Male, age 80, left hemisphere 76.2
1955 Male, age 76, both hemispheres 67.5
Central amygdala
nTPM: 77.3
2701 Female, age 91, right hemisphere 93.8
2239 Male, age 80, left hemisphere 84.8
2826 Female, age 94, left hemisphere 81.1
2515 Male, age 75, right hemisphere 67.0
1905 Male, age 76, both hemispheres 60.0
Corticomedial amygdala
nTPM: 90.0
2535 Female, age 67, right hemisphere 159.2
2829 Male, age 80, left hemisphere 86.0
2429 Female, age 94, left hemisphere 81.8
2242 Female, age 91, right hemisphere 81.3
2240 Male, age 76, both hemispheres 71.7
2428 Male, age 75, right hemisphere 59.7
Lateral amygdala
nTPM: 71.8
2255 Female, age 91, right hemisphere 87.2
2534 Female, age 94, left hemisphere 82.6
2256 Male, age 80, left hemisphere 75.5
1883 Male, age 76, both hemispheres 62.1
2516 Male, age 75, right hemisphere 62.1
2830 Female, age 67, right hemisphere 61.6
Stria terminalis, bed nucleus
nTPM: 92.9
2201 Male, age 74, unknown 102.5
1974 Female, age 91, both hemispheres 96.9
2486 Female, age 94, both hemispheres 79.5

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 111.8
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 111.8
Samples: 152

Max nTPM: 260.1
Min nTPM: 41.7
Std nTPM: 38.7
Median nTPM: 103.9
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 260.1
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 228.6
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 223.4
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 218.3
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 209.0
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 205.4
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 189.4
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 187.3
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 184.6
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 182.1
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 173.9
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 171.4
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 169.4
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 166.6
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 166.6
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 159.6
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 156.7
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 155.8
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 153.2
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 151.1
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 149.1
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 149.0
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 147.6
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 147.6
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 145.9
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 144.1
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 141.8
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 141.1
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 140.6
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 139.8
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 139.6
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 138.6
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 138.3
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 137.9
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 136.2
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 136.0
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 129.8
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 129.7
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 129.5
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 129.4
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 129.1
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 127.9
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 127.3
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 126.9
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 126.3
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 124.6
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 124.6
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 123.3
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 123.1
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 122.8
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 122.2
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 120.2
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 119.1
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 118.8
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 117.5
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 117.5
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 117.0
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 114.4
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 113.8
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 111.6
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 111.5
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 111.0
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 110.3
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 109.3
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 109.1
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 107.3
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 107.2
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 107.1
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 107.0
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 106.7
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 106.5
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 106.2
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 105.1
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 105.1
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 105.0
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 105.0
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 102.9
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 102.7
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 102.6
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 102.3
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 102.2
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 102.0
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 100.9
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 100.2
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 100.1
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 100.1
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 99.9
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 99.9
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 99.8
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 99.8
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 99.4
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 99.4
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 98.4
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 98.2
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 97.0
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 96.8
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 96.1
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 95.3
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 95.3
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 95.0
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 94.5
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 94.3
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 94.3
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 94.0
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 93.4
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 93.4
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 93.3
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 93.0
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 92.7
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 90.0
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 89.9
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 89.3
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 88.4
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 88.2
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 87.5
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 87.0
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 86.8
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 86.7
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 86.6
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 86.2
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 85.0
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 83.5
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 82.9
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 82.8
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 81.6
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 80.5
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 79.8
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 79.6
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 79.1
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 77.3
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 76.7
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 76.3
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 74.8
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 72.6
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 72.3
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 66.6
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 65.5
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 64.9
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 64.4
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 61.6
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 61.3
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 59.5
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 58.6
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 58.0
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 53.7
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 53.5
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 53.2
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 53.2
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 50.5
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 45.5
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 43.7
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 41.7
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 104.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 104.5
FF:10151-102I7 76 years, female 104.5

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 95.2
Pig sample Sample description nTPM
Amygdala
nTPM: 95.2
Samples: 4

Max nTPM: 133.9
Min nTPM: 73.9
Sample A Female 133.9
Sample B Female 76.3
Sample C Male 73.9
Sample D Male 96.7

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 51.9
Mouse sample Sample description nTPM
Amygdala
nTPM: 52.0
Samples: 4

Max nTPM: 60.1
Min nTPM: 42.1
Sample A Male 60.1
Sample B Male 53.0
Sample C Female 42.1
Sample D Female 52.6

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 16.6
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 16.6
73817931 Antisense, RP_051214_01_A02, Mouse strain C57BL/6J (56 days, male) 16.7
385781 Antisense, RP_040625_01_E09, Mouse strain C57BL/6J (56 days, male) 16.5

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