BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:34.8 nTPM
HPA:34.8 nTPM
GTEx:28.7 nTPM
FANTOM5:38.3 Scaled Tags Per Million
Pig:8.6 nTPM
Mouse:14.2 nTPM
Allen mouse:0.9 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA067031
Glial cells Medium
Neuronal cells Medium


BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 34.8
Sample id Sample description nTPM
Caudate nucleus
nTPM: 32.4
2288 Male, age 75, left hemisphere 33.8
2481 Female, age 94, left hemisphere 33.3
2846 Female, age 79, unknown 32.7
2290 Female, age 72, unknown 32.6
2289 Male, age 61, right hemisphere 32.4
1781 Male, age 74, unknown 31.8
1854 Male, age 80, left hemisphere 31.7
1857 Female, age 85, left hemisphere 30.8
Claustrum
nTPM: 33.4
2292 Female, age 85, both hemispheres 35.3
1956 Male, age 74, unknown 34.2
2568 Male, age 61, both hemispheres 33.6
2196 Female, age 79, unknown 33.5
2645 Female, age 72, unknown 33.4
2491 Male, age 75, both hemispheres 33.2
2284 Female, age 91, both hemispheres 32.7
2392 Female, age 94, both hemispheres 32.4
2198 Male, age 80, both hemispheres 32.2
Globus pallidus, externus
nTPM: 34.8
2567 Female, age 72, unknown 37.9
2646 Male, age 61, right hemisphere 36.7
2395 Male, age 75, both hemispheres 33.9
1996 Male, age 80, right hemisphere 32.6
2772 Female, age 79, unknown 32.6
Globus pallidus, internus
nTPM: 34.6
2566 Female, age 72, unknown 37.7
2111 Female, age 85, right hemisphere 35.9
1818 Male, age 74, unknown 34.3
2287 Male, age 75, right hemisphere 34.2
2778 Female, age 91, both hemispheres 33.9
2037 Male, age 80, right hemisphere 33.3
2483 Female, age 94, right hemisphere 32.8
Nucleus accumbens
nTPM: 32.4
2391 Female, age 94, left hemisphere 34.5
2698 Female, age 72, unknown 33.4
2732 Male, age 80, right hemisphere 32.6
2286 Male, age 75, left hemisphere 32.5
1783 Male, age 74, unknown 32.1
2824 Male, age 61, right hemisphere 32.1
1806 Female, age 85, left hemisphere 31.6
1856 Female, age 91, right hemisphere 30.9
Nucleus basalis of Meynert
nTPM: 33.8
2569 Male, age 61, both hemispheres 35.3
2821 Male, age 75, both hemispheres 34.9
2393 Male, age 80, right hemisphere 32.8
2484 Female, age 94, left hemisphere 32.1
Nucleus of the diagonal band
nTPM: 31.5
2029 Male, age 61, right hemisphere 32.4
2195 Female, age 85, both hemispheres 32.2
1979 Male, age 74, unknown 32.1
2775 Male, age 80, right hemisphere 30.8
1812 Female, age 91, both hemispheres 30.2
Olfactory tubercle
nTPM: 31.4
2487 Female, age 94, left hemisphere 31.8
1998 Female, age 91, both hemispheres 31.6
2856 Male, age 75, right hemisphere 31.6
1846 Male, age 80, right hemisphere 30.7
Putamen
nTPM: 33.1
2647 Male, age 75, left hemisphere 35.4
2489 Female, age 72, unknown 34.8
2482 Female, age 94, left hemisphere 33.0
1829 Male, age 74, unknown 32.8
1838 Male, age 80, right hemisphere 32.6
2466 Female, age 79, unknown 31.9
1937 Female, age 91, right hemisphere 31.6
Septal nuclei
nTPM: 31.8
2199 Male, age 80, right hemisphere 32.9
2629 Female, age 94, right hemisphere 32.8
2394 Male, age 61, left hemisphere 32.6
2059 Female, age 85, both hemispheres 31.7
2009 Female, age 91, both hemispheres 31.1
1960 Male, age 74, unknown 31.0
2031 Female, age 72, unknown 30.7

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 28.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 24.2
Samples: 246

Max nTPM: 44.5
Min nTPM: 6.5
Std nTPM: 6.2
Median nTPM: 23.8
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 44.5
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 42.4
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 40.8
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 40.1
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 39.4
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 39.0
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 38.8
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 38.6
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 38.6
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 37.5
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 35.6
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 22.6
Samples: 246

Max nTPM: 47.8
Min nTPM: 8.2
Std nTPM: 6.8
Median nTPM: 21.5
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 47.8
GTEX-1I1HK-0011-R6b-SM-CM2T9 60-69 years, male 45.3
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 43.2
GTEX-1H3O1-0011-R6b-SM-CL54U 60-69 years, male 40.2
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 39.2
GTEX-144GO-0011-R6b-SM-5S2V7 60-69 years, male 37.4
GTEX-1F88E-0011-R6a-SM-CKZNW 60-69 years, female 37.0
GTEX-1BAJH-0011-R6b-SM-7MXT2 70-79 years, male 36.2
GTEX-12ZZW-0011-R6a-SM-5DUVZ 50-59 years, male 35.7
GTEX-13OVH-0011-R6b-SM-5LUAX 70-79 years, male 35.6
GTEX-18A6Q-0011-R6a-SM-7LG6R 60-69 years, male 35.2
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Brain - Putamen (basal ganglia)
Average nTPM: 28.7
Samples: 205

Max nTPM: 52.6
Min nTPM: 9.3
Std nTPM: 7.5
Median nTPM: 28.2
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 52.6
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 47.8
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 47.7
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 44.6
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 44.5
GTEX-11DXW-0011-R7b-SM-DO119 40-49 years, male 43.4
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 43.2
GTEX-1GMRU-0011-R7b-SM-A96TJ 50-59 years, male 42.9
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 42.2
GTEX-1F52S-0011-R7b-SM-9QEH8 60-69 years, female 42.0
GTEX-RU72-0011-R7A-SM-2TF5U 50-59 years, female 41.6
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 38.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 30.1
FF:10164-103B2 76 years, female 30.1
Globus pallidus
Scaled Tags Per Million: 38.3
FF:10161-103A8 76 years, female 39.5
FF:10175-103C4 60 years, female 37.1
Nucleus accumbens
Scaled Tags Per Million: 32.0
FF:10037-101F1 23-56 years, mixed 32.0
Putamen
Scaled Tags Per Million: 26.5
FF:10176-103C5 60 years, female 26.5

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 8.6
Pig sample Sample description nTPM
Caudate
nTPM: 7.6
Samples: 4

Max nTPM: 8.2
Min nTPM: 6.8
Sample A Female 8.2
Sample B Female 7.4
Sample C Male 6.8
Sample D Male 8.0
Putamen
nTPM: 8.6
Samples: 4

Max nTPM: 9.7
Min nTPM: 7.9
Sample A Female 9.7
Sample B Female 8.0
Sample C Male 7.9
Sample D Male 8.8
Septum
nTPM: 7.7
Samples: 4

Max nTPM: 8.7
Min nTPM: 6.7
Sample A Female 8.7
Sample B Female 7.6
Sample C Male 6.7
Sample D Male 7.7
Ventral pallidum
nTPM: 8.2
Samples: 4

Max nTPM: 8.9
Min nTPM: 7.1
Sample A Female 8.9
Sample B Female 8.0
Sample C Male 7.1
Sample D Male 8.6

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 14.2
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 13.9
Samples: 4

Max nTPM: 16.1
Min nTPM: 12.0
Sample A Male 12.0
Sample B Male 14.8
Sample C Female 16.1
Sample D Female 12.8
Septum
nTPM: 14.3
Samples: 4

Max nTPM: 16.9
Min nTPM: 12.6
Sample A Male 13.9
Sample B Male 16.9
Sample C Female 13.6
Sample D Female 12.6
Ventral forebrain
nTPM: 12.5
Samples: 4

Max nTPM: 13.3
Min nTPM: 11.9
Sample A Male 11.9
Sample B Male 13.3
Sample C Female 12.6
Sample D Female 12.2

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.9
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.7
69444885 Antisense, RP_050414_04_G11, Mouse strain C57BL/6J (56 days, male) 0.7
Pallidum
Expression energy: 0.9
69444885 Antisense, RP_050414_04_G11, Mouse strain C57BL/6J (56 days, male) 0.9

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