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TISSUE AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN OVARY
PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
Dictionary
Tissue proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:126.5 nTPM
HPA:126.5 nTPM
GTEx:236.3 nTPM
FANTOM5:404.9 Scaled Tags Per Million
Pig:86.5 nTPM
Mouse:68.6 nTPM
Allen mouse:4.3 Expression energy

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max nTPM 126.5
Sample id Sample description nTPM
Amygdala
nTPM: 105.0
2514 Male, age 75, right hemisphere 116.9
2814 Male, age 76, right hemisphere 113.0
2517 Female, age 94, left hemisphere 104.7
2695 Female, age 67, right hemisphere 98.4
1987 Female, age 91, left hemisphere 91.7
Basal amygdala
nTPM: 105.4
2827 Female, age 67, right hemisphere 156.6
2609 Male, age 75, right hemisphere 119.4
2685 Female, age 94, left hemisphere 95.9
2110 Male, age 80, left hemisphere 94.8
1955 Male, age 76, both hemispheres 84.0
2243 Female, age 91, right hemisphere 81.6
Central amygdala
nTPM: 104.6
2826 Female, age 94, left hemisphere 122.5
1905 Male, age 76, both hemispheres 105.5
2515 Male, age 75, right hemisphere 101.8
2239 Male, age 80, left hemisphere 99.2
2701 Female, age 91, right hemisphere 94.2
Corticomedial amygdala
nTPM: 93.6
2428 Male, age 75, right hemisphere 124.2
2535 Female, age 67, right hemisphere 120.5
2829 Male, age 80, left hemisphere 90.4
2429 Female, age 94, left hemisphere 88.9
2242 Female, age 91, right hemisphere 72.8
2240 Male, age 76, both hemispheres 64.6
Lateral amygdala
nTPM: 126.5
2830 Female, age 67, right hemisphere 169.6
2516 Male, age 75, right hemisphere 149.7
2534 Female, age 94, left hemisphere 116.0
2256 Male, age 80, left hemisphere 115.8
2255 Female, age 91, right hemisphere 104.1
1883 Male, age 76, both hemispheres 104.0
Stria terminalis, bed nucleus
nTPM: 76.9
2201 Male, age 74, unknown 82.2
1974 Female, age 91, both hemispheres 80.8
2486 Female, age 94, both hemispheres 67.8

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 236.3
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 236.3
Samples: 152

Max nTPM: 589.0
Min nTPM: 3.8
Std nTPM: 109.2
Median nTPM: 206.2
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 589.0
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 480.9
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 473.0
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 462.3
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 456.8
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 452.6
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 447.4
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 446.2
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 439.6
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 434.1
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 431.3
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 420.5
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 413.6
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 407.9
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 406.5
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 389.7
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 386.8
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 379.5
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 378.4
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 378.4
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 376.3
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 371.9
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 369.6
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 366.3
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 365.6
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 361.7
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 360.6
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 347.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 346.4
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 346.2
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 344.5
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 334.1
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 327.8
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 326.8
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 323.5
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 323.5
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 321.9
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 320.0
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 314.4
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 313.2
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 308.9
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 308.8
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 308.2
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 305.9
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 301.7
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 300.5
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 296.6
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 293.0
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 291.9
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 289.3
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 279.6
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 272.3
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 267.5
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 259.3
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 259.3
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 259.3
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 253.6
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 253.2
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 252.0
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 249.7
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 247.7
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 245.6
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 243.8
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 236.4
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 230.7
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 224.5
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 224.5
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 220.5
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 218.5
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 218.4
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 218.2
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 217.6
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 213.4
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 212.1
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 208.7
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 207.0
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 205.4
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 203.1
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 199.5
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 198.8
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 198.2
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 197.9
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 197.5
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 196.4
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 190.7
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 188.3
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 188.2
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 187.1
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 186.2
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 180.3
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 177.7
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 174.6
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 170.6
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 169.0
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 167.3
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 165.9
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 164.4
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 164.1
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 163.7
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 163.6
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 163.6
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 163.1
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 162.6
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 161.9
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 161.1
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 160.2
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 159.3
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 159.2
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 158.6
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 155.5
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 155.1
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 154.6
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 154.2
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 153.4
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 151.9
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 150.9
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 150.7
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 149.5
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 148.3
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 148.2
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 145.7
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 142.4
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 139.7
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 138.8
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 137.8
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 135.7
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 135.5
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 133.6
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 131.9
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 130.6
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 129.1
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 124.5
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 124.0
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 122.7
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 122.1
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 121.9
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 119.7
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 118.8
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 118.6
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 114.9
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 114.1
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 112.2
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 111.5
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 106.8
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 101.1
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 101.0
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 97.8
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 96.2
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 95.7
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 84.9
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 50.4
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 3.8
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 404.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 404.9
FF:10151-102I7 76 years, female 404.9

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 86.5
Pig sample Sample description nTPM
Amygdala
nTPM: 86.5
Samples: 4

Max nTPM: 96.6
Min nTPM: 65.9
Sample A Female 91.7
Sample B Female 96.6
Sample C Male 91.8
Sample D Male 65.9

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 68.6
Mouse sample Sample description nTPM
Amygdala
nTPM: 68.6
Samples: 4

Max nTPM: 97.1
Min nTPM: 51.3
Sample A Male 58.3
Sample B Male 51.3
Sample C Female 97.1
Sample D Female 67.6

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 4.3
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 4.3
70437828 Antisense, RP_050614_03_A03, Mouse strain C57BL/6J (56 days, male) 4.3

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