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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:47.7 nTPM
HPA:47.7 nTPM
GTEx:34.4 nTPM
FANTOM5:28.7 Scaled Tags Per Million
Pig:17.7 nTPM
Mouse:9.4 nTPM
Allen mouse:16.7 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 47.7
Sample id Sample description nTPM
Amygdala
nTPM: 42.8
2517 Female, age 94, left hemisphere 50.1
2514 Male, age 75, right hemisphere 46.1
1987 Female, age 91, left hemisphere 42.0
2695 Female, age 67, right hemisphere 38.2
2814 Male, age 76, right hemisphere 37.7
Basal amygdala
nTPM: 43.5
2609 Male, age 75, right hemisphere 47.3
2685 Female, age 94, left hemisphere 44.8
2110 Male, age 80, left hemisphere 43.7
2243 Female, age 91, right hemisphere 42.7
2827 Female, age 67, right hemisphere 42.4
1955 Male, age 76, both hemispheres 40.1
Central amygdala
nTPM: 42.4
2826 Female, age 94, left hemisphere 51.7
2239 Male, age 80, left hemisphere 44.3
2515 Male, age 75, right hemisphere 40.6
1905 Male, age 76, both hemispheres 37.9
2701 Female, age 91, right hemisphere 37.8
Corticomedial amygdala
nTPM: 42.7
2428 Male, age 75, right hemisphere 47.7
2429 Female, age 94, left hemisphere 44.1
2535 Female, age 67, right hemisphere 43.2
2829 Male, age 80, left hemisphere 41.6
2242 Female, age 91, right hemisphere 40.1
2240 Male, age 76, both hemispheres 39.3
Lateral amygdala
nTPM: 47.7
2516 Male, age 75, right hemisphere 53.9
2256 Male, age 80, left hemisphere 51.7
2534 Female, age 94, left hemisphere 48.1
2255 Female, age 91, right hemisphere 47.9
2830 Female, age 67, right hemisphere 46.1
1883 Male, age 76, both hemispheres 38.5
Stria terminalis, bed nucleus
nTPM: 36.7
1974 Female, age 91, both hemispheres 38.5
2486 Female, age 94, both hemispheres 38.1
2201 Male, age 74, unknown 33.7

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 34.4
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 34.4
Samples: 152

Max nTPM: 88.8
Min nTPM: 9.4
Std nTPM: 14.2
Median nTPM: 32.7
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 88.8
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 80.0
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 75.3
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 69.2
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 62.1
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 62.0
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 61.6
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 58.6
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 58.3
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 56.0
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 55.1
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 55.0
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 51.4
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 51.0
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 51.0
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 50.1
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 49.6
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 49.6
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 49.6
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 48.9
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 48.5
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 48.4
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 48.3
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 47.7
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 47.7
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 47.4
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 47.3
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 47.3
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 47.2
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 46.7
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 46.5
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 46.2
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 46.0
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 45.8
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 45.7
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 45.4
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 45.2
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 44.7
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 43.6
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 42.5
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 42.4
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 42.0
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 41.6
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 41.4
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 41.3
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 40.7
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 40.6
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 40.1
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 40.0
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 39.8
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 39.8
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 39.5
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 39.4
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 39.3
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 39.0
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 38.8
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 38.7
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 38.7
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 38.1
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 37.8
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 37.4
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 37.4
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 37.4
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 37.4
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 36.9
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 36.9
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 36.4
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 35.9
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 35.6
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 34.9
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 34.5
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 33.6
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 33.0
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 32.9
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 32.8
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 32.7
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 32.7
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 31.9
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 31.9
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 31.7
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 31.3
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 31.3
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 31.2
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 30.9
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 30.9
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 30.7
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 30.6
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 30.5
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 30.5
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 30.1
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 29.9
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 29.4
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 28.9
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 28.5
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 28.0
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 28.0
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 27.8
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 27.8
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 27.5
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 27.5
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 27.2
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 27.0
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 27.0
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 26.6
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 26.2
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 25.9
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 25.5
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 25.4
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 25.4
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 25.3
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 25.2
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 25.0
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 24.7
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 24.6
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 24.2
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 23.9
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 23.6
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 23.4
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 23.2
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 22.9
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 22.6
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 22.5
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 22.4
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 22.2
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 21.5
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 21.5
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 21.5
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 20.8
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 19.3
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 19.0
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 18.9
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 18.6
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 18.1
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 17.5
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 17.5
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 16.6
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 16.2
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 16.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 15.2
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 15.1
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 14.3
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 14.1
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 14.1
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 13.5
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 13.5
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 13.4
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 13.2
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 13.0
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 11.9
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 11.9
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 10.6
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 9.4
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 28.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 28.7
FF:10151-102I7 76 years, female 28.7

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 17.7
Pig sample Sample description nTPM
Amygdala
nTPM: 17.7
Samples: 4

Max nTPM: 21.8
Min nTPM: 14.6
Sample A Female 18.7
Sample B Female 14.6
Sample C Male 21.8
Sample D Male 15.7

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 9.4
Mouse sample Sample description nTPM
Amygdala
nTPM: 9.4
Samples: 4

Max nTPM: 12.4
Min nTPM: 6.3
Sample A Male 6.3
Sample B Male 7.2
Sample C Female 12.4
Sample D Female 11.7

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 16.7
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 16.7
68499081 Antisense, RP_050113_02_H08, Mouse strain C57BL/6J (56 days, male) 16.7

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