MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:45.2 nTPM
HPA:45.2 nTPM
GTEx:61.7 nTPM
FANTOM5:14.2 Scaled Tags Per Million

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 45.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 25.5
1827 Male, age 72, unknown 40.7
2019 Male, age 18, unknown 36.0
2828 Female, age 72, unknown 32.4
2586 Male, age 75, left hemisphere 32.2
2219 Male, age 76, both hemispheres 31.5
2666 Male, age 74, left hemisphere 29.1
1870 Female, age 42, unknown 18.6
1830 Male, age 51, unknown 11.8
1833 Male, age 53, unknown 11.6
2411 Female, age 72, unknown 11.5
Dorsal raphe nucleus
nTPM: 17.1
2298 Female, age 72, unknown 24.3
2047 Male, age 72, unknown 20.4
1828 Male, age 53, unknown 16.5
2750 Male, age 76, both hemispheres 15.7
2016 Female, age 72, unknown 8.4
Inferior colliculus
nTPM: 27.2
2097 Female, age 72, unknown 35.8
1890 Male, age 53, unknown 26.7
1848 Female, age 42, unknown 25.7
2849 Male, age 72, unknown 20.5
Median raphe nucleus
nTPM: 23.0
2220 Male, age 76, midline 23.0
Pedunculopontine tegmental nucleus
nTPM: 21.0
1921 Female, age 85, both hemispheres 26.2
2334 Male, age 80, both hemispheres 20.8
2338 Male, age 61, both hemispheres 16.0
Periaquaductal grey, anterior
nTPM: 33.4
1795 Male, age 51, unknown 48.9
2502 Female, age 75, unknown 29.7
1947 Male, age 18, unknown 21.6
Periaquaductal grey, dorsal
nTPM: 20.6
1831 Male, age 72, unknown 24.2
2850 Male, age 76, both hemispheres 20.9
1840 Male, age 53, unknown 20.4
2464 Female, age 72, unknown 16.7
Periaquaductal grey, lateral
nTPM: 21.6
2053 Male, age 18, unknown 23.1
2272 Male, age 74, both hemispheres 21.9
2140 Male, age 76, both hemispheres 19.8
Pretectal area
nTPM: 45.2
1816 Male, age 51, unknown 88.5
1944 Female, age 72, unknown 82.4
1817 Female, age 42, unknown 68.7
2007 Male, age 72, unknown 66.8
1815 Male, age 53, unknown 52.1
2667 Female, age 75, unknown 36.8
2407 Male, age 75, both hemispheres 25.6
2224 Female, age 72, unknown 25.2
2316 Male, age 76, right hemisphere 17.5
2825 Male, age 18, unknown 17.4
2273 Male, age 74, both hemispheres 16.2
Red nucleus
nTPM: 13.5
2785 Male, age 18, unknown 40.0
2584 Male, age 75, left hemisphere 22.8
2588 Male, age 74, left hemisphere 17.3
2725 Female, age 75, unknown 16.2
1954 Female, age 42, unknown 10.5
1904 Male, age 53, unknown 9.6
1821 Female, age 72, unknown 9.0
2503 Female, age 72, unknown 8.9
2769 Male, age 72, unknown 7.9
1865 Male, age 51, unknown 7.7
2227 Male, age 72, unknown 6.8
2823 Male, age 76, right hemisphere 5.1
Substantia nigra
nTPM: 26.8
1889 Female, age 72, unknown 46.1
2665 Male, age 74, both hemispheres 39.3
1941 Male, age 53, unknown 33.5
1916 Female, age 42, unknown 32.3
1851 Male, age 51, unknown 29.4
2409 Female, age 72, unknown 20.5
2590 Female, age 75, unknown 19.2
2583 Male, age 75, right hemisphere 17.5
2241 Male, age 72, unknown 16.5
2699 Male, age 18, unknown 13.3
Superior colliculus
nTPM: 35.2
2087 Female, age 72, unknown 61.8
1796 Male, age 53, unknown 55.7
2668 Female, age 75, unknown 39.9
2261 Male, age 18, unknown 39.0
2664 Male, age 75, both hemispheres 32.3
1913 Female, age 42, unknown 29.0
1895 Male, age 76, right hemisphere 27.9
1995 Male, age 72, unknown 26.9
1839 Male, age 51, unknown 20.4
2587 Male, age 74, left hemisphere 19.2
Ventral tegmental area
nTPM: 26.6
2223 Female, age 72, unknown 47.5
2218 Male, age 76, both hemispheres 27.2
1915 Female, age 42, unknown 25.3
2410 Female, age 72, unknown 22.4
1942 Male, age 51, unknown 20.6
2021 Male, age 53, unknown 16.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 61.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 61.7
Samples: 139

Max nTPM: 197.4
Min nTPM: 12.4
Std nTPM: 32.2
Median nTPM: 59.2
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 197.4
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 153.9
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 148.6
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 143.0
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 137.8
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 125.1
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 124.4
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 121.7
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 119.7
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 112.1
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 110.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 14.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 14.2
FF:10158-103A5 76 years, female 14.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
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