MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:162.1 nTPM
HPA:162.1 nTPM
GTEx:139.2 nTPM
FANTOM5:111.3 Scaled Tags Per Million
Pig:158.3 nTPM
Mouse:338.5 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 162.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 154.7
2019 Male, age 18, unknown 164.6
1870 Female, age 42, unknown 158.3
1827 Male, age 72, unknown 155.8
2219 Male, age 76, both hemispheres 154.8
2411 Female, age 72, unknown 154.7
2666 Male, age 74, left hemisphere 154.5
1833 Male, age 53, unknown 153.2
2828 Female, age 72, unknown 151.9
1830 Male, age 51, unknown 151.0
2586 Male, age 75, left hemisphere 147.9
Dorsal raphe nucleus
nTPM: 156.7
1828 Male, age 53, unknown 159.7
2298 Female, age 72, unknown 159.3
2750 Male, age 76, both hemispheres 157.2
2047 Male, age 72, unknown 155.1
2016 Female, age 72, unknown 152.1
Inferior colliculus
nTPM: 159.0
2097 Female, age 72, unknown 161.5
1890 Male, age 53, unknown 160.2
1848 Female, age 42, unknown 158.2
2849 Male, age 72, unknown 156.0
Median raphe nucleus
nTPM: 157.7
2220 Male, age 76, midline 157.7
Pedunculopontine tegmental nucleus
nTPM: 162.1
2334 Male, age 80, both hemispheres 163.7
1921 Female, age 85, both hemispheres 161.9
2338 Male, age 61, both hemispheres 160.7
Periaquaductal grey, anterior
nTPM: 154.6
1795 Male, age 51, unknown 155.5
1947 Male, age 18, unknown 154.8
2502 Female, age 75, unknown 153.6
Periaquaductal grey, dorsal
nTPM: 153.5
2850 Male, age 76, both hemispheres 157.8
1831 Male, age 72, unknown 153.9
1840 Male, age 53, unknown 152.5
2464 Female, age 72, unknown 149.8
Periaquaductal grey, lateral
nTPM: 153.5
2272 Male, age 74, both hemispheres 156.9
2053 Male, age 18, unknown 151.8
2140 Male, age 76, both hemispheres 151.7
Pretectal area
nTPM: 161.0
2007 Male, age 72, unknown 171.8
1816 Male, age 51, unknown 168.8
1817 Female, age 42, unknown 167.3
1944 Female, age 72, unknown 165.1
1815 Male, age 53, unknown 163.1
2667 Female, age 75, unknown 160.2
2224 Female, age 72, unknown 158.7
2273 Male, age 74, both hemispheres 157.3
2407 Male, age 75, both hemispheres 153.4
2825 Male, age 18, unknown 153.1
2316 Male, age 76, right hemisphere 152.6
Red nucleus
nTPM: 157.7
1821 Female, age 72, unknown 167.4
2725 Female, age 75, unknown 162.2
2785 Male, age 18, unknown 160.6
2503 Female, age 72, unknown 157.9
1865 Male, age 51, unknown 157.7
2823 Male, age 76, right hemisphere 157.3
2769 Male, age 72, unknown 156.4
1954 Female, age 42, unknown 155.7
1904 Male, age 53, unknown 155.2
2227 Male, age 72, unknown 154.6
2584 Male, age 75, left hemisphere 154.6
2588 Male, age 74, left hemisphere 153.0
Substantia nigra
nTPM: 159.0
1889 Female, age 72, unknown 171.1
1916 Female, age 42, unknown 166.6
1851 Male, age 51, unknown 162.0
1941 Male, age 53, unknown 161.0
2665 Male, age 74, both hemispheres 159.7
2241 Male, age 72, unknown 157.8
2699 Male, age 18, unknown 156.9
2590 Female, age 75, unknown 152.9
2409 Female, age 72, unknown 151.2
2583 Male, age 75, right hemisphere 150.4
Superior colliculus
nTPM: 156.2
1895 Male, age 76, right hemisphere 162.2
2087 Female, age 72, unknown 161.0
2587 Male, age 74, left hemisphere 160.1
2668 Female, age 75, unknown 158.5
1796 Male, age 53, unknown 157.0
1913 Female, age 42, unknown 154.9
1995 Male, age 72, unknown 154.1
2261 Male, age 18, unknown 153.8
1839 Male, age 51, unknown 153.6
2664 Male, age 75, both hemispheres 146.9
Ventral tegmental area
nTPM: 157.3
2218 Male, age 76, both hemispheres 162.2
1915 Female, age 42, unknown 160.8
2410 Female, age 72, unknown 159.2
2223 Female, age 72, unknown 157.3
1942 Male, age 51, unknown 152.6
2021 Male, age 53, unknown 151.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 139.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 139.2
Samples: 139

Max nTPM: 283.9
Min nTPM: 82.5
Std nTPM: 34.7
Median nTPM: 132.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 283.9
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 267.2
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 224.2
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 211.4
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 206.7
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 204.8
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 203.2
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 202.0
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 200.5
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 200.1
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 197.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 111.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 111.3
FF:10158-103A5 76 years, female 111.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 158.3
Pig sample Sample description nTPM
Midbrain
nTPM: 135.0
Samples: 4

Max nTPM: 153.3
Min nTPM: 120.5
Sample A Female 134.8
Sample B Female 120.5
Sample C Male 153.3
Sample D Male 131.2
Periaqueductal gray
nTPM: 103.8
Samples: 3

Max nTPM: 108.4
Min nTPM: 97.1
Sample B Female 105.8
Sample C Male 108.4
Sample D Male 97.1
Substantia nigra
nTPM: 111.5
Samples: 4

Max nTPM: 139.2
Min nTPM: 92.0
Sample A Female 139.2
Sample B Female 92.0
Sample C Male 117.6
Sample D Male 97.1
Superior colliculi
nTPM: 158.4
Samples: 4

Max nTPM: 191.7
Min nTPM: 125.3
Sample A Female 178.7
Sample B Female 125.3
Sample C Male 191.7
Sample D Male 137.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 338.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 338.5
Samples: 4

Max nTPM: 368.1
Min nTPM: 297.6
Sample A Male 368.1
Sample B Male 332.2
Sample C Female 297.6
Sample D Female 356.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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