BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:114.2 nTPM
HPA:114.2 nTPM
GTEx:249.6 nTPM
FANTOM5:175.9 Scaled Tags Per Million

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 114.2
Sample id Sample description nTPM
Caudate nucleus
nTPM: 109.7
2846 Female, age 79, unknown 115.3
2290 Female, age 72, unknown 114.8
1857 Female, age 85, left hemisphere 112.7
2288 Male, age 75, left hemisphere 110.4
1781 Male, age 74, unknown 108.5
2481 Female, age 94, left hemisphere 107.1
1854 Male, age 80, left hemisphere 105.2
2289 Male, age 61, right hemisphere 103.6
Claustrum
nTPM: 110.0
2568 Male, age 61, both hemispheres 115.3
2198 Male, age 80, both hemispheres 114.8
2196 Female, age 79, unknown 114.6
2284 Female, age 91, both hemispheres 114.4
1956 Male, age 74, unknown 109.8
2491 Male, age 75, both hemispheres 109.7
2645 Female, age 72, unknown 105.5
2392 Female, age 94, both hemispheres 104.6
2292 Female, age 85, both hemispheres 101.2
Globus pallidus, externus
nTPM: 93.6
2646 Male, age 61, right hemisphere 99.4
2395 Male, age 75, both hemispheres 93.3
2567 Female, age 72, unknown 92.6
2772 Female, age 79, unknown 92.3
1996 Male, age 80, right hemisphere 90.6
Globus pallidus, internus
nTPM: 93.1
2483 Female, age 94, right hemisphere 102.3
1818 Male, age 74, unknown 96.0
2287 Male, age 75, right hemisphere 94.9
2566 Female, age 72, unknown 93.9
2778 Female, age 91, both hemispheres 90.0
2037 Male, age 80, right hemisphere 89.3
2111 Female, age 85, right hemisphere 85.0
Nucleus accumbens
nTPM: 108.0
2698 Female, age 72, unknown 121.4
1856 Female, age 91, right hemisphere 120.9
1806 Female, age 85, left hemisphere 107.7
2286 Male, age 75, left hemisphere 107.7
1783 Male, age 74, unknown 107.0
2824 Male, age 61, right hemisphere 104.4
2391 Female, age 94, left hemisphere 98.7
2732 Male, age 80, right hemisphere 96.6
Nucleus basalis of Meynert
nTPM: 102.6
2821 Male, age 75, both hemispheres 107.6
2393 Male, age 80, right hemisphere 102.7
2484 Female, age 94, left hemisphere 100.9
2569 Male, age 61, both hemispheres 99.3
Nucleus of the diagonal band
nTPM: 114.2
2195 Female, age 85, both hemispheres 128.5
2775 Male, age 80, right hemisphere 116.2
1812 Female, age 91, both hemispheres 111.3
1979 Male, age 74, unknown 111.3
2029 Male, age 61, right hemisphere 103.5
Olfactory tubercle
nTPM: 113.7
2487 Female, age 94, left hemisphere 118.7
2856 Male, age 75, right hemisphere 116.2
1846 Male, age 80, right hemisphere 111.3
1998 Female, age 91, both hemispheres 108.6
Putamen
nTPM: 106.5
1838 Male, age 80, right hemisphere 110.6
1937 Female, age 91, right hemisphere 109.1
1829 Male, age 74, unknown 108.5
2489 Female, age 72, unknown 105.8
2482 Female, age 94, left hemisphere 105.7
2647 Male, age 75, left hemisphere 105.7
2466 Female, age 79, unknown 100.2
Septal nuclei
nTPM: 109.7
2629 Female, age 94, right hemisphere 127.7
1960 Male, age 74, unknown 114.7
2059 Female, age 85, both hemispheres 112.5
2199 Male, age 80, right hemisphere 106.3
2009 Female, age 91, both hemispheres 105.7
2031 Female, age 72, unknown 101.3
2394 Male, age 61, left hemisphere 99.7

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 249.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 194.5
Samples: 246

Max nTPM: 498.1
Min nTPM: 79.7
Std nTPM: 64.4
Median nTPM: 188.8
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 498.1
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 394.2
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 389.4
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 385.3
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 366.1
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 355.2
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 350.7
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 332.1
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 325.3
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 320.3
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 319.1
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 249.6
Samples: 246

Max nTPM: 416.9
Min nTPM: 95.8
Std nTPM: 68.4
Median nTPM: 252.2
GTEX-13FLV-0011-R6a-SM-5KLZ4 50-59 years, male 416.9
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 386.7
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 385.7
GTEX-13FHO-0011-R6b-SM-5LZX1 60-69 years, male 384.2
GTEX-12WSH-0011-R6b-SM-5P9F4 50-59 years, male 379.3
GTEX-14BIN-0011-R6a-SM-5S2RH 50-59 years, female 370.3
GTEX-1AX9I-0011-R6a-SM-7P8PK 60-69 years, male 367.9
GTEX-1C6VR-0011-R6a-SM-7MXU8 60-69 years, male 366.8
GTEX-12WSF-0011-R6b-SM-5HL8W 70-79 years, male 366.7
GTEX-1F6I4-0011-R6a-SM-CE6R4 60-69 years, male 366.5
GTEX-13O3Q-0011-R6a-SM-5KM2V 50-59 years, male 364.4
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Brain - Putamen (basal ganglia)
Average nTPM: 190.1
Samples: 205

Max nTPM: 334.0
Min nTPM: 70.5
Std nTPM: 59.4
Median nTPM: 186.8
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 334.0
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 326.1
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 324.3
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 324.2
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 311.2
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 307.7
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 296.3
GTEX-ZUA1-0011-R7b-SM-4YCDP 40-49 years, male 295.2
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 293.8
GTEX-1H3O1-0011-R7a-SM-CE6SJ 60-69 years, male 293.1
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 292.6
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 175.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 124.6
FF:10164-103B2 76 years, female 124.6
Globus pallidus
Scaled Tags Per Million: 83.0
FF:10175-103C4 60 years, female 116.0
FF:10161-103A8 76 years, female 50.0
Nucleus accumbens
Scaled Tags Per Million: 134.1
FF:10037-101F1 23-56 years, mixed 134.1
Putamen
Scaled Tags Per Million: 175.9
FF:10176-103C5 60 years, female 175.9

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The Human Protein Atlas

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