MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:11.9 nTPM
HPA:11.9 nTPM
GTEx:23.6 nTPM
FANTOM5:15.1 Scaled Tags Per Million
Mouse:3.6 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 11.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 10.5
1827 Male, age 72, unknown 11.3
2828 Female, age 72, unknown 11.1
2411 Female, age 72, unknown 10.9
2586 Male, age 75, left hemisphere 10.7
2219 Male, age 76, both hemispheres 10.6
1870 Female, age 42, unknown 10.3
2019 Male, age 18, unknown 10.3
1833 Male, age 53, unknown 10.2
1830 Male, age 51, unknown 10.0
2666 Male, age 74, left hemisphere 9.7
Dorsal raphe nucleus
nTPM: 11.2
2298 Female, age 72, unknown 11.8
2750 Male, age 76, both hemispheres 11.3
1828 Male, age 53, unknown 11.1
2047 Male, age 72, unknown 11.1
2016 Female, age 72, unknown 10.5
Inferior colliculus
nTPM: 10.7
2097 Female, age 72, unknown 11.3
2849 Male, age 72, unknown 10.7
1890 Male, age 53, unknown 10.6
1848 Female, age 42, unknown 10.4
Median raphe nucleus
nTPM: 11.3
2220 Male, age 76, midline 11.3
Pedunculopontine tegmental nucleus
nTPM: 10.1
2334 Male, age 80, both hemispheres 10.9
1921 Female, age 85, both hemispheres 10.3
2338 Male, age 61, both hemispheres 9.3
Periaquaductal grey, anterior
nTPM: 11.8
1795 Male, age 51, unknown 12.1
1947 Male, age 18, unknown 11.7
2502 Female, age 75, unknown 11.5
Periaquaductal grey, dorsal
nTPM: 10.0
1840 Male, age 53, unknown 10.5
2850 Male, age 76, both hemispheres 10.1
2464 Female, age 72, unknown 9.9
1831 Male, age 72, unknown 9.4
Periaquaductal grey, lateral
nTPM: 10.7
2272 Male, age 74, both hemispheres 11.5
2140 Male, age 76, both hemispheres 10.4
2053 Male, age 18, unknown 10.3
Pretectal area
nTPM: 11.1
1816 Male, age 51, unknown 12.2
1944 Female, age 72, unknown 11.8
1817 Female, age 42, unknown 11.7
2273 Male, age 74, both hemispheres 11.7
2007 Male, age 72, unknown 11.5
2224 Female, age 72, unknown 11.5
2667 Female, age 75, unknown 11.1
1815 Male, age 53, unknown 11.0
2825 Male, age 18, unknown 10.6
2407 Male, age 75, both hemispheres 10.2
2316 Male, age 76, right hemisphere 9.1
Red nucleus
nTPM: 10.5
2503 Female, age 72, unknown 11.9
1821 Female, age 72, unknown 11.7
2785 Male, age 18, unknown 10.9
2769 Male, age 72, unknown 10.7
1865 Male, age 51, unknown 10.4
1954 Female, age 42, unknown 10.4
2227 Male, age 72, unknown 10.4
2725 Female, age 75, unknown 10.2
2823 Male, age 76, right hemisphere 10.2
1904 Male, age 53, unknown 10.1
2588 Male, age 74, left hemisphere 10.1
2584 Male, age 75, left hemisphere 9.3
Substantia nigra
nTPM: 11.5
1916 Female, age 42, unknown 13.3
1941 Male, age 53, unknown 12.5
1851 Male, age 51, unknown 12.4
2699 Male, age 18, unknown 12.3
2241 Male, age 72, unknown 11.6
1889 Female, age 72, unknown 11.3
2590 Female, age 75, unknown 10.8
2665 Male, age 74, both hemispheres 10.7
2409 Female, age 72, unknown 10.0
2583 Male, age 75, right hemisphere 9.7
Superior colliculus
nTPM: 10.8
2587 Male, age 74, left hemisphere 11.9
2668 Female, age 75, unknown 11.9
1895 Male, age 76, right hemisphere 11.2
1796 Male, age 53, unknown 10.9
2261 Male, age 18, unknown 10.8
1913 Female, age 42, unknown 10.5
2087 Female, age 72, unknown 10.5
2664 Male, age 75, both hemispheres 10.2
1995 Male, age 72, unknown 10.1
1839 Male, age 51, unknown 9.7
Ventral tegmental area
nTPM: 11.9
1915 Female, age 42, unknown 13.1
2218 Male, age 76, both hemispheres 12.2
2223 Female, age 72, unknown 11.8
2410 Female, age 72, unknown 11.8
1942 Male, age 51, unknown 11.3
2021 Male, age 53, unknown 11.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 23.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 23.6
Samples: 139

Max nTPM: 40.8
Min nTPM: 11.3
Std nTPM: 6.1
Median nTPM: 22.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 40.8
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 40.2
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 39.4
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 38.2
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 37.5
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 36.9
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 35.6
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 34.8
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 34.4
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 34.3
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 34.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 15.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 15.1
FF:10158-103A5 76 years, female 15.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 3.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 3.6
Samples: 4

Max nTPM: 4.1
Min nTPM: 3.4
Sample A Male 4.1
Sample B Male 3.4
Sample C Female 3.6
Sample D Female 3.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
71022972 Antisense, RP_050719_02_A07, Mouse strain C57BL/6J (56 days, male) 0.1

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