HIPPOCAMPAL FORMATION - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:13.4 nTPM
HPA:13.4 nTPM
GTEx:9.3 nTPM
FANTOM5:63.2 Scaled Tags Per Million
Pig:32.7 nTPM
Mouse:187.4 nTPM
Allen mouse:6.5 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 13.4
Sample id Sample description nTPM
Hippocampus
nTPM: 12.6
1911 Female, age 85, right hemisphere 12.9
1855 Male, age 76, left hemisphere 12.6
1898 Male, age 80, left hemisphere 12.6
2621 Female, age 67, right hemisphere 12.6
2529 Female, age 94, left hemisphere 12.5
2148 Female, age 91, left hemisphere 12.4
Dentate gyrus
nTPM: 12.8
2246 Female, age 85, both hemispheres 13.1
1927 Female, age 91, both hemispheres 13.0
2528 Male, age 74, both hemispheres 13.0
2010 Male, age 76, both hemispheres 12.7
2530 Female, age 94, left hemisphere 12.7
2531 Female, age 67, both hemispheres 12.4
Entorhinal gyrus
nTPM: 12.5
2613 Female, age 94, left hemisphere 12.7
2686 Male, age 75, right hemisphere 12.7
2764 Male, age 80, right hemisphere 12.6
1938 Female, age 85, left hemisphere 12.4
1787 Male, age 76, left hemisphere 12.3
2117 Female, age 91, right hemisphere 12.3
Hippocampus, CA1
nTPM: 12.8
1873 Female, age 85, both hemispheres 13.1
2527 Male, age 74, both hemispheres 13.1
2749 Male, age 80, left hemisphere 13.0
2082 Female, age 91, right hemisphere 12.6
2045 Male, age 76, both hemispheres 12.4
Hippocampus, CA2
nTPM: 12.8
1892 Male, age 76, both hemispheres 12.9
2437 Female, age 94, left hemisphere 12.9
2249 Male, age 74, both hemispheres 12.8
1940 Female, age 85, left hemisphere 12.7
1963 Male, age 80, left hemisphere 12.5
2113 Female, age 91, right hemisphere 12.5
Hippocampus, CA3
nTPM: 13.4
1867 Male, age 76, both hemispheres 15.9
2620 Female, age 94, left hemisphere 13.3
1891 Female, age 85, both hemispheres 13.1
2436 Male, age 74, both hemispheres 13.1
2137 Male, age 80, left hemisphere 12.7
2861 Female, age 67, both hemispheres 12.3
Parahippocampal cortex
nTPM: 12.6
2693 Female, age 94, both hemispheres 13.1
2692 Male, age 74, both hemispheres 13.0
1933 Female, age 85, both hemispheres 12.8
1850 Male, age 80, both hemispheres 12.7
2245 Female, age 91, both hemispheres 12.6
2532 Female, age 72, left hemisphere 12.6
1990 Female, age 91, right hemisphere 12.5
2622 Female, age 67, right hemisphere 12.5
2018 Male, age 76, both hemispheres 12.3
2250 Female, age 67, right hemisphere 12.3
Perirhinal gyrus
nTPM: 13.4
1847 Female, age 91, left hemisphere 15.6
2521 Female, age 94, right hemisphere 13.2
1841 Female, age 85, right hemisphere 13.1
1794 Male, age 80, right hemisphere 12.6
2848 Male, age 76, right hemisphere 12.5
Subiculum
nTPM: 13.0
2438 Female, age 94, left hemisphere 14.2
2619 Male, age 74, both hemispheres 13.1
1901 Male, age 80, both hemispheres 12.9
2729 Female, age 91, right hemisphere 12.8
2042 Male, age 76, both hemispheres 12.7
1977 Female, age 85, both hemispheres 12.6

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 9.3
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 9.3
Samples: 197

Max nTPM: 32.9
Min nTPM: 0.6
Std nTPM: 5.6
Median nTPM: 8.0
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 32.9
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 28.7
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 27.4
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 27.3
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 26.8
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 22.8
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 22.8
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 22.4
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 22.0
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 20.7
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 19.5
Show allShow less

HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 63.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 63.2
FF:10169-103B7 60 years, female 65.9
FF:10153-102I9 76 years, female 60.5

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 32.7
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 30.7
Samples: 4

Max nTPM: 38.0
Min nTPM: 25.3
Sample A Female 38.0
Sample B Female 27.6
Sample C Male 31.9
Sample D Male 25.3
Entorhinal cortex
nTPM: 28.8
Samples: 4

Max nTPM: 35.7
Min nTPM: 23.6
Sample A Female 29.1
Sample B Female 35.7
Sample C Male 26.6
Sample D Male 23.6
Subiculum
nTPM: 29.3
Samples: 4

Max nTPM: 37.8
Min nTPM: 24.9
Sample A Female 37.8
Sample B Female 27.0
Sample C Male 27.6
Sample D Male 24.9
Ventral hippocampus
nTPM: 32.8
Samples: 4

Max nTPM: 41.2
Min nTPM: 23.0
Sample A Female 39.7
Sample B Female 23.0
Sample C Male 41.2
Sample D Male 27.1

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 187.4
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 185.8
Samples: 4

Max nTPM: 215.4
Min nTPM: 162.9
Sample A Male 184.9
Sample B Male 215.4
Sample C Female 179.8
Sample D Female 162.9
Hippocampal formation
nTPM: 187.4
Samples: 4

Max nTPM: 197.0
Min nTPM: 174.1
Sample A Male 189.2
Sample B Male 189.2
Sample C Female 174.1
Sample D Female 197.0

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 6.5
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 6.5
69114998 Antisense, RP_050317_02_D12, Mouse strain C57BL/6J (56 days, male) 6.5

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.