BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:5.0 nTPM
HPA:5.0 nTPM
GTEx:12.0 nTPM
FANTOM5:2.7 Scaled Tags Per Million
Mouse:10.4 nTPM
Allen mouse:0.0 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

CAUDATE - Antibody stainingi
Antibody HPA049857
Glial cells Not detected
Neuronal cells Not detected



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 5.0
Sample id Sample description nTPM
Caudate nucleus
nTPM: 4.5
2289 Male, age 61, right hemisphere 8.2
2290 Female, age 72, unknown 5.1
2288 Male, age 75, left hemisphere 5.0
1854 Male, age 80, left hemisphere 3.9
1857 Female, age 85, left hemisphere 3.9
1781 Male, age 74, unknown 3.8
2846 Female, age 79, unknown 3.5
2481 Female, age 94, left hemisphere 2.9
Claustrum
nTPM: 4.0
2491 Male, age 75, both hemispheres 5.7
1956 Male, age 74, unknown 4.6
2568 Male, age 61, both hemispheres 4.2
2284 Female, age 91, both hemispheres 4.1
2292 Female, age 85, both hemispheres 4.0
2645 Female, age 72, unknown 3.9
2198 Male, age 80, both hemispheres 3.5
2196 Female, age 79, unknown 3.3
2392 Female, age 94, both hemispheres 2.4
Globus pallidus, externus
nTPM: 2.7
2646 Male, age 61, right hemisphere 3.4
2567 Female, age 72, unknown 3.2
2772 Female, age 79, unknown 3.2
2395 Male, age 75, both hemispheres 1.9
1996 Male, age 80, right hemisphere 1.8
Globus pallidus, internus
nTPM: 2.2
2111 Female, age 85, right hemisphere 3.7
2566 Female, age 72, unknown 3.5
2287 Male, age 75, right hemisphere 2.8
2778 Female, age 91, both hemispheres 2.0
1818 Male, age 74, unknown 1.5
2483 Female, age 94, right hemisphere 1.4
2037 Male, age 80, right hemisphere 0.6
Nucleus accumbens
nTPM: 5.0
2824 Male, age 61, right hemisphere 8.0
1783 Male, age 74, unknown 7.1
1806 Female, age 85, left hemisphere 5.7
2732 Male, age 80, right hemisphere 5.5
2286 Male, age 75, left hemisphere 4.8
1856 Female, age 91, right hemisphere 4.7
2698 Female, age 72, unknown 2.8
2391 Female, age 94, left hemisphere 1.5
Nucleus basalis of Meynert
nTPM: 3.8
2484 Female, age 94, left hemisphere 6.2
2569 Male, age 61, both hemispheres 3.6
2821 Male, age 75, both hemispheres 2.7
2393 Male, age 80, right hemisphere 2.5
Nucleus of the diagonal band
nTPM: 4.4
1979 Male, age 74, unknown 5.4
2029 Male, age 61, right hemisphere 4.9
2775 Male, age 80, right hemisphere 4.6
1812 Female, age 91, both hemispheres 3.5
2195 Female, age 85, both hemispheres 3.3
Olfactory tubercle
nTPM: 4.4
2487 Female, age 94, left hemisphere 5.9
1998 Female, age 91, both hemispheres 5.1
2856 Male, age 75, right hemisphere 3.7
1846 Male, age 80, right hemisphere 2.7
Putamen
nTPM: 4.4
2647 Male, age 75, left hemisphere 6.6
2466 Female, age 79, unknown 5.0
1838 Male, age 80, right hemisphere 4.4
1937 Female, age 91, right hemisphere 4.4
1829 Male, age 74, unknown 4.0
2489 Female, age 72, unknown 3.2
2482 Female, age 94, left hemisphere 3.0
Septal nuclei
nTPM: 4.0
1960 Male, age 74, unknown 7.3
2059 Female, age 85, both hemispheres 5.3
2031 Female, age 72, unknown 4.0
2009 Female, age 91, both hemispheres 3.3
2199 Male, age 80, right hemisphere 3.0
2394 Male, age 61, left hemisphere 2.5
2629 Female, age 94, right hemisphere 2.5

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 12.0
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 9.8
Samples: 246

Max nTPM: 21.8
Min nTPM: 3.0
Std nTPM: 3.0
Median nTPM: 9.7
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 21.8
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 18.4
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 17.8
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 17.5
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 17.0
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 17.0
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 16.9
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 16.2
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 15.4
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 14.9
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 14.8
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 12.0
Samples: 246

Max nTPM: 21.2
Min nTPM: 2.4
Std nTPM: 3.7
Median nTPM: 12.0
GTEX-18A6Q-0011-R6a-SM-7LG6R 60-69 years, male 21.2
GTEX-1HR9M-0011-R6a-SM-ARU6Z 60-69 years, male 21.2
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 21.0
GTEX-12ZZX-0011-R6a-SM-5HL8L 40-49 years, female 20.2
GTEX-14BIN-0011-R6a-SM-5S2RH 50-59 years, female 20.1
GTEX-14ASI-0011-R6a-SM-5S2UZ 60-69 years, male 19.8
GTEX-145LU-0011-R6a-SM-5S2V6 50-59 years, male 19.6
GTEX-X585-0011-R6A-SM-46MVJ 50-59 years, male 19.3
GTEX-12ZZW-0011-R6a-SM-5DUVZ 50-59 years, male 19.1
GTEX-12WSC-0011-R6b-SM-5LU99 50-59 years, male 18.2
GTEX-1C6VR-0011-R6a-SM-7MXU8 60-69 years, male 18.1
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Brain - Putamen (basal ganglia)
Average nTPM: 10.3
Samples: 205

Max nTPM: 19.3
Min nTPM: 2.5
Std nTPM: 3.1
Median nTPM: 10.5
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 19.3
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 18.3
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 18.2
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 18.1
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 17.6
GTEX-13112-0011-R7b-SM-5DUVW 50-59 years, male 17.4
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 16.7
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 16.7
GTEX-13O3Q-0011-R7a-SM-5KM38 50-59 years, male 16.5
GTEX-1I1GQ-0011-R7a-SM-CJI41 50-59 years, male 16.2
GTEX-12WSC-0011-R7b-SM-5LU9L 50-59 years, male 15.9
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 2.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 2.3
FF:10164-103B2 76 years, female 2.3
Globus pallidus
Scaled Tags Per Million: 1.9
FF:10175-103C4 60 years, female 2.3
FF:10161-103A8 76 years, female 1.6
Nucleus accumbens
Scaled Tags Per Million: 2.7
FF:10037-101F1 23-56 years, mixed 2.7
Putamen
Scaled Tags Per Million: 2.5
FF:10176-103C5 60 years, female 2.5

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 10.4
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 6.0
Samples: 4

Max nTPM: 8.8
Min nTPM: 3.6
Sample A Male 6.4
Sample B Male 8.8
Sample C Female 3.6
Sample D Female 5.0
Septum
nTPM: 10.4
Samples: 4

Max nTPM: 12.1
Min nTPM: 8.1
Sample A Male 10.3
Sample B Male 11.1
Sample C Female 12.1
Sample D Female 8.1
Ventral forebrain
nTPM: 8.2
Samples: 4

Max nTPM: 11.5
Min nTPM: 5.2
Sample A Male 9.0
Sample B Male 7.2
Sample C Female 11.5
Sample D Female 5.2

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.0
68920683 Antisense, RP_050303_01_A07, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 0.0
68920683 Antisense, RP_050303_01_A07, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

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