MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:70.3 nTPM
HPA:70.3 nTPM
GTEx:73.6 nTPM
FANTOM5:41.4 Scaled Tags Per Million
Pig:55.7 nTPM
Mouse:27.5 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 70.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 64.4
2586 Male, age 75, left hemisphere 67.5
2411 Female, age 72, unknown 66.3
2828 Female, age 72, unknown 66.3
1870 Female, age 42, unknown 65.9
1833 Male, age 53, unknown 65.5
1830 Male, age 51, unknown 64.7
2019 Male, age 18, unknown 63.6
1827 Male, age 72, unknown 63.1
2666 Male, age 74, left hemisphere 62.9
2219 Male, age 76, both hemispheres 58.5
Dorsal raphe nucleus
nTPM: 69.1
2298 Female, age 72, unknown 72.9
2016 Female, age 72, unknown 72.1
1828 Male, age 53, unknown 67.5
2047 Male, age 72, unknown 66.8
2750 Male, age 76, both hemispheres 66.0
Inferior colliculus
nTPM: 62.3
1848 Female, age 42, unknown 64.0
2849 Male, age 72, unknown 63.5
1890 Male, age 53, unknown 61.5
2097 Female, age 72, unknown 60.4
Median raphe nucleus
nTPM: 65.1
2220 Male, age 76, midline 65.1
Pedunculopontine tegmental nucleus
nTPM: 64.6
2338 Male, age 61, both hemispheres 65.9
2334 Male, age 80, both hemispheres 65.1
1921 Female, age 85, both hemispheres 62.9
Periaquaductal grey, anterior
nTPM: 65.7
1795 Male, age 51, unknown 69.0
2502 Female, age 75, unknown 64.4
1947 Male, age 18, unknown 63.6
Periaquaductal grey, dorsal
nTPM: 67.4
2850 Male, age 76, both hemispheres 73.2
1840 Male, age 53, unknown 66.7
1831 Male, age 72, unknown 65.0
2464 Female, age 72, unknown 64.6
Periaquaductal grey, lateral
nTPM: 70.3
2272 Male, age 74, both hemispheres 73.9
2140 Male, age 76, both hemispheres 70.6
2053 Male, age 18, unknown 66.5
Pretectal area
nTPM: 65.7
2273 Male, age 74, both hemispheres 72.9
2667 Female, age 75, unknown 69.0
2224 Female, age 72, unknown 67.5
2825 Male, age 18, unknown 66.5
2316 Male, age 76, right hemisphere 66.4
1815 Male, age 53, unknown 64.7
2407 Male, age 75, both hemispheres 64.6
1817 Female, age 42, unknown 64.2
1944 Female, age 72, unknown 62.9
1816 Male, age 51, unknown 61.8
2007 Male, age 72, unknown 61.7
Red nucleus
nTPM: 65.4
1904 Male, age 53, unknown 68.6
2227 Male, age 72, unknown 67.4
2823 Male, age 76, right hemisphere 66.8
1954 Female, age 42, unknown 66.3
2769 Male, age 72, unknown 66.3
2725 Female, age 75, unknown 66.2
1865 Male, age 51, unknown 66.1
2503 Female, age 72, unknown 65.4
2785 Male, age 18, unknown 64.9
1821 Female, age 72, unknown 63.6
2584 Male, age 75, left hemisphere 61.7
2588 Male, age 74, left hemisphere 61.1
Substantia nigra
nTPM: 65.7
2699 Male, age 18, unknown 72.0
1851 Male, age 51, unknown 68.5
1916 Female, age 42, unknown 67.6
2590 Female, age 75, unknown 65.7
2665 Male, age 74, both hemispheres 65.2
2241 Male, age 72, unknown 65.0
2583 Male, age 75, right hemisphere 64.5
1889 Female, age 72, unknown 63.8
1941 Male, age 53, unknown 62.9
2409 Female, age 72, unknown 61.9
Superior colliculus
nTPM: 65.1
1995 Male, age 72, unknown 70.8
1913 Female, age 42, unknown 67.1
2664 Male, age 75, both hemispheres 65.9
1796 Male, age 53, unknown 65.4
2587 Male, age 74, left hemisphere 65.1
2261 Male, age 18, unknown 64.5
2087 Female, age 72, unknown 64.1
1839 Male, age 51, unknown 63.3
1895 Male, age 76, right hemisphere 62.3
2668 Female, age 75, unknown 62.0
Ventral tegmental area
nTPM: 66.3
1915 Female, age 42, unknown 67.9
2410 Female, age 72, unknown 67.8
2021 Male, age 53, unknown 67.3
2223 Female, age 72, unknown 65.7
1942 Male, age 51, unknown 64.8
2218 Male, age 76, both hemispheres 64.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 73.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 73.6
Samples: 139

Max nTPM: 290.2
Min nTPM: 24.7
Std nTPM: 37.8
Median nTPM: 63.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 290.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 236.7
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 203.0
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 188.1
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 167.9
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 167.2
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 162.3
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 148.6
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 146.1
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 130.0
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 121.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 41.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 41.4
FF:10158-103A5 76 years, female 41.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 55.7
Pig sample Sample description nTPM
Midbrain
nTPM: 55.8
Samples: 4

Max nTPM: 100.3
Min nTPM: 35.3
Sample A Female 100.3
Sample B Female 49.5
Sample C Male 37.9
Sample D Male 35.3
Periaqueductal gray
nTPM: 45.0
Samples: 3

Max nTPM: 45.5
Min nTPM: 44.6
Sample B Female 44.6
Sample C Male 45.5
Sample D Male 45.0
Substantia nigra
nTPM: 49.6
Samples: 4

Max nTPM: 63.1
Min nTPM: 41.7
Sample A Female 63.1
Sample B Female 45.9
Sample C Male 41.7
Sample D Male 47.8
Superior colliculi
nTPM: 52.2
Samples: 4

Max nTPM: 56.9
Min nTPM: 46.8
Sample A Female 55.9
Sample B Female 56.9
Sample C Male 49.0
Sample D Male 46.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 27.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 27.5
Samples: 4

Max nTPM: 28.7
Min nTPM: 26.2
Sample A Male 28.0
Sample B Male 26.9
Sample C Female 26.2
Sample D Female 28.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
68191564 Antisense, RP_041129_01_D09, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.