HIPPOCAMPAL FORMATION - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:11.5 nTPM
HPA:11.5 nTPM
GTEx:11.6 nTPM
FANTOM5:32.9 Scaled Tags Per Million
Pig:7.2 nTPM
Mouse:29.9 nTPM
Allen mouse:6.1 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 11.5
Sample id Sample description nTPM
Hippocampus
nTPM: 9.5
2621 Female, age 67, right hemisphere 15.2
2148 Female, age 91, left hemisphere 13.8
1898 Male, age 80, left hemisphere 8.5
1855 Male, age 76, left hemisphere 7.7
1911 Female, age 85, right hemisphere 6.1
2529 Female, age 94, left hemisphere 5.8
Dentate gyrus
nTPM: 11.5
2530 Female, age 94, left hemisphere 17.2
1927 Female, age 91, both hemispheres 16.1
2531 Female, age 67, both hemispheres 12.6
2010 Male, age 76, both hemispheres 9.3
2528 Male, age 74, both hemispheres 7.9
2246 Female, age 85, both hemispheres 5.8
Entorhinal gyrus
nTPM: 5.3
2613 Female, age 94, left hemisphere 12.2
2764 Male, age 80, right hemisphere 5.6
1787 Male, age 76, left hemisphere 5.0
2686 Male, age 75, right hemisphere 4.5
1938 Female, age 85, left hemisphere 3.6
2117 Female, age 91, right hemisphere 1.1
Hippocampus, CA1
nTPM: 10.0
2749 Male, age 80, left hemisphere 18.4
1873 Female, age 85, both hemispheres 10.7
2527 Male, age 74, both hemispheres 10.4
2045 Male, age 76, both hemispheres 8.4
2082 Female, age 91, right hemisphere 2.2
Hippocampus, CA2
nTPM: 7.5
1963 Male, age 80, left hemisphere 15.4
1892 Male, age 76, both hemispheres 10.7
2437 Female, age 94, left hemisphere 9.4
2249 Male, age 74, both hemispheres 5.6
2113 Female, age 91, right hemisphere 2.5
1940 Female, age 85, left hemisphere 1.5
Hippocampus, CA3
nTPM: 9.8
2861 Female, age 67, both hemispheres 15.7
2620 Female, age 94, left hemisphere 15.2
2137 Male, age 80, left hemisphere 10.6
2436 Male, age 74, both hemispheres 7.2
1867 Male, age 76, both hemispheres 6.7
1891 Female, age 85, both hemispheres 3.4
Parahippocampal cortex
nTPM: 4.6
2245 Female, age 91, both hemispheres 8.9
2622 Female, age 67, right hemisphere 6.5
1990 Female, age 91, right hemisphere 5.8
2692 Male, age 74, both hemispheres 5.8
2250 Female, age 67, right hemisphere 4.7
2693 Female, age 94, both hemispheres 4.1
1850 Male, age 80, both hemispheres 3.3
2532 Female, age 72, left hemisphere 2.8
1933 Female, age 85, both hemispheres 2.3
2018 Male, age 76, both hemispheres 1.6
Perirhinal gyrus
nTPM: 3.8
1847 Female, age 91, left hemisphere 5.6
2521 Female, age 94, right hemisphere 5.1
2848 Male, age 76, right hemisphere 3.6
1794 Male, age 80, right hemisphere 2.8
1841 Female, age 85, right hemisphere 1.9
Subiculum
nTPM: 4.1
2729 Female, age 91, right hemisphere 5.8
1901 Male, age 80, both hemispheres 4.7
2619 Male, age 74, both hemispheres 4.2
2438 Female, age 94, left hemisphere 3.5
2042 Male, age 76, both hemispheres 3.3
1977 Female, age 85, both hemispheres 2.9

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 11.6
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 11.6
Samples: 197

Max nTPM: 81.5
Min nTPM: 0.6
Std nTPM: 9.1
Median nTPM: 10.0
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 81.5
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 39.0
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 34.0
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 33.1
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 33.0
GTEX-14E6D-0011-R1b-SM-5YYAW 50-59 years, male 30.6
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 28.6
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 28.5
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 28.2
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 27.1
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 26.2
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 32.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 32.9
FF:10169-103B7 60 years, female 44.9
FF:10153-102I9 76 years, female 20.8

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 7.2
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 7.2
Samples: 4

Max nTPM: 8.8
Min nTPM: 5.6
Sample A Female 8.8
Sample B Female 8.0
Sample C Male 5.6
Sample D Male 6.3
Entorhinal cortex
nTPM: 6.0
Samples: 4

Max nTPM: 6.5
Min nTPM: 5.8
Sample A Female 6.5
Sample B Female 5.8
Sample C Male 5.9
Sample D Male 5.8
Subiculum
nTPM: 4.9
Samples: 4

Max nTPM: 6.4
Min nTPM: 3.9
Sample A Female 6.4
Sample B Female 3.9
Sample C Male 5.2
Sample D Male 4.1
Ventral hippocampus
nTPM: 7.0
Samples: 4

Max nTPM: 8.6
Min nTPM: 4.3
Sample A Female 8.6
Sample B Female 4.3
Sample C Male 7.8
Sample D Male 7.1

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 29.9
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 20.2
Samples: 4

Max nTPM: 23.2
Min nTPM: 17.7
Sample A Male 19.9
Sample B Male 17.7
Sample C Female 23.2
Sample D Female 19.9
Hippocampal formation
nTPM: 29.9
Samples: 4

Max nTPM: 38.5
Min nTPM: 22.6
Sample A Male 22.6
Sample B Male 29.8
Sample C Female 38.5
Sample D Female 28.6

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 6.1
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 6.1
77869865 Antisense, RP_070212_03_B12, Mouse strain C57BL/6J (56 days, male) 6.3
69783136 Antisense, RP_050505_04_D09, Mouse strain C57BL/6J (56 days, male) 5.9
71670686 Antisense, RP_050505_04_D09, Mouse strain C57BL/6J (56 days, male) 5.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
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