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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:119.0 nTPM
HPA:119.0 nTPM
GTEx:95.5 nTPM

AMYGDALA - HPA Brain RNA-seq
Max nTPM 119.0
Sample id Sample description nTPM
Amygdala
nTPM: 101.1
2814 Male, age 76, right hemisphere 107.9
1987 Female, age 91, left hemisphere 100.7
2695 Female, age 67, right hemisphere 100.3
2514 Male, age 75, right hemisphere 99.3
2517 Female, age 94, left hemisphere 97.4
Basal amygdala
nTPM: 101.4
2243 Female, age 91, right hemisphere 104.7
2685 Female, age 94, left hemisphere 104.7
1955 Male, age 76, both hemispheres 103.8
2609 Male, age 75, right hemisphere 101.9
2110 Male, age 80, left hemisphere 101.6
2827 Female, age 67, right hemisphere 91.7
Central amygdala
nTPM: 102.0
2239 Male, age 80, left hemisphere 103.6
2826 Female, age 94, left hemisphere 102.6
2701 Female, age 91, right hemisphere 102.2
1905 Male, age 76, both hemispheres 102.0
2515 Male, age 75, right hemisphere 99.8
Corticomedial amygdala
nTPM: 101.4
2240 Male, age 76, both hemispheres 105.8
2429 Female, age 94, left hemisphere 104.7
2242 Female, age 91, right hemisphere 103.6
2829 Male, age 80, left hemisphere 101.9
2428 Male, age 75, right hemisphere 99.3
2535 Female, age 67, right hemisphere 93.4
Lateral amygdala
nTPM: 100.1
2534 Female, age 94, left hemisphere 105.5
1883 Male, age 76, both hemispheres 105.3
2516 Male, age 75, right hemisphere 103.6
2255 Female, age 91, right hemisphere 97.4
2256 Male, age 80, left hemisphere 96.5
2830 Female, age 67, right hemisphere 92.2
Stria terminalis, bed nucleus
nTPM: 119.0
1974 Female, age 91, both hemispheres 133.9
2486 Female, age 94, both hemispheres 120.3
2201 Male, age 74, unknown 102.7

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 95.5
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 95.5
Samples: 152

Max nTPM: 202.3
Min nTPM: 44.3
Std nTPM: 28.9
Median nTPM: 89.2
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 202.3
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 186.4
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 180.9
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 172.4
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 162.6
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 154.0
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 153.8
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 149.0
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 146.6
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 144.9
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 142.3
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 141.9
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 141.3
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 141.1
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 140.2
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 139.9
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 136.9
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 136.8
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 133.2
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 130.8
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 129.3
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 129.3
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 129.2
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 126.2
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 125.9
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 121.7
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 121.0
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 121.0
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 116.5
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 116.4
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 116.2
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 115.7
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 113.7
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 112.9
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 112.5
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 111.8
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 111.4
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 111.1
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 111.1
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 110.0
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 109.9
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 107.2
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 107.0
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 106.9
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 105.8
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 105.4
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 104.4
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 104.0
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 102.0
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 101.6
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 101.5
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 101.2
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 101.0
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 100.6
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 100.4
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 99.2
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 99.1
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 98.7
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 98.1
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 95.5
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 95.0
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 94.8
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 94.4
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 93.9
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 93.2
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 92.4
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 92.3
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 92.3
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 92.3
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 92.2
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 91.6
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 91.4
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 90.5
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 90.4
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 89.5
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 89.3
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 89.2
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 88.4
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 87.3
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 87.2
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 87.1
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 86.5
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 86.3
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 86.2
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 85.9
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 84.7
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 84.5
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 84.4
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 84.3
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 84.1
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 83.0
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 82.7
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 82.6
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 82.6
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 82.4
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 82.2
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 82.0
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 81.7
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 81.2
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 80.6
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 80.0
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 79.8
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 79.7
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 79.6
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 78.6
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 78.5
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 78.1
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 77.5
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 76.8
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 76.6
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 76.5
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 76.1
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 75.8
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 75.6
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 75.1
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 75.0
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 74.2
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 73.3
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 72.8
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 72.0
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 72.0
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 71.8
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 71.8
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 71.1
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 71.0
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 70.6
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 70.4
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 69.3
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 69.2
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 69.2
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 67.9
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 67.3
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 67.0
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 66.9
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 66.8
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 66.4
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 66.0
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 65.9
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 65.5
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 65.3
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 63.8
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 63.6
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 62.2
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 60.8
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 58.8
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 56.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 55.7
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 54.1
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 50.5
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 49.0
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 48.7
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 44.3
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