MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:108.8 nTPM
HPA:108.8 nTPM
GTEx:99.1 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 108.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 101.2
2219 Male, age 76, both hemispheres 104.3
2586 Male, age 75, left hemisphere 104.0
1827 Male, age 72, unknown 103.5
1833 Male, age 53, unknown 102.7
2666 Male, age 74, left hemisphere 102.7
1870 Female, age 42, unknown 100.2
1830 Male, age 51, unknown 99.9
2411 Female, age 72, unknown 99.3
2828 Female, age 72, unknown 98.7
2019 Male, age 18, unknown 96.6
Dorsal raphe nucleus
nTPM: 101.8
2047 Male, age 72, unknown 105.3
2298 Female, age 72, unknown 104.1
2750 Male, age 76, both hemispheres 102.5
1828 Male, age 53, unknown 101.8
2016 Female, age 72, unknown 95.4
Inferior colliculus
nTPM: 103.4
2097 Female, age 72, unknown 105.8
2849 Male, age 72, unknown 105.6
1848 Female, age 42, unknown 102.5
1890 Male, age 53, unknown 99.8
Median raphe nucleus
nTPM: 108.8
2220 Male, age 76, midline 108.8
Pedunculopontine tegmental nucleus
nTPM: 103.7
2334 Male, age 80, both hemispheres 106.4
1921 Female, age 85, both hemispheres 105.2
2338 Male, age 61, both hemispheres 99.5
Periaquaductal grey, anterior
nTPM: 100.6
1947 Male, age 18, unknown 102.5
1795 Male, age 51, unknown 101.9
2502 Female, age 75, unknown 97.5
Periaquaductal grey, dorsal
nTPM: 98.4
1840 Male, age 53, unknown 101.8
2850 Male, age 76, both hemispheres 100.1
2464 Female, age 72, unknown 98.7
1831 Male, age 72, unknown 93.2
Periaquaductal grey, lateral
nTPM: 96.2
2053 Male, age 18, unknown 97.2
2272 Male, age 74, both hemispheres 96.3
2140 Male, age 76, both hemispheres 95.0
Pretectal area
nTPM: 99.8
1817 Female, age 42, unknown 107.8
2007 Male, age 72, unknown 102.8
2224 Female, age 72, unknown 102.1
1815 Male, age 53, unknown 101.8
1816 Male, age 51, unknown 101.4
1944 Female, age 72, unknown 100.9
2825 Male, age 18, unknown 100.5
2667 Female, age 75, unknown 99.0
2407 Male, age 75, both hemispheres 95.9
2273 Male, age 74, both hemispheres 94.5
2316 Male, age 76, right hemisphere 91.3
Red nucleus
nTPM: 97.1
2725 Female, age 75, unknown 105.5
1821 Female, age 72, unknown 103.5
2785 Male, age 18, unknown 99.6
2584 Male, age 75, left hemisphere 99.4
1954 Female, age 42, unknown 97.9
2588 Male, age 74, left hemisphere 96.9
2769 Male, age 72, unknown 95.5
2503 Female, age 72, unknown 95.4
2227 Male, age 72, unknown 95.0
1904 Male, age 53, unknown 93.8
1865 Male, age 51, unknown 92.8
2823 Male, age 76, right hemisphere 90.2
Substantia nigra
nTPM: 103.4
1916 Female, age 42, unknown 108.5
2241 Male, age 72, unknown 107.4
1889 Female, age 72, unknown 107.3
1941 Male, age 53, unknown 105.4
1851 Male, age 51, unknown 105.3
2665 Male, age 74, both hemispheres 104.7
2699 Male, age 18, unknown 102.0
2583 Male, age 75, right hemisphere 100.5
2409 Female, age 72, unknown 96.9
2590 Female, age 75, unknown 95.7
Superior colliculus
nTPM: 98.4
2587 Male, age 74, left hemisphere 102.9
1839 Male, age 51, unknown 101.9
1895 Male, age 76, right hemisphere 100.9
2668 Female, age 75, unknown 100.9
1796 Male, age 53, unknown 99.5
2087 Female, age 72, unknown 97.6
2261 Male, age 18, unknown 96.9
1913 Female, age 42, unknown 95.1
2664 Male, age 75, both hemispheres 94.3
1995 Male, age 72, unknown 94.0
Ventral tegmental area
nTPM: 102.8
2218 Male, age 76, both hemispheres 106.8
1915 Female, age 42, unknown 104.6
2223 Female, age 72, unknown 104.5
2410 Female, age 72, unknown 102.8
1942 Male, age 51, unknown 99.7
2021 Male, age 53, unknown 98.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 99.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 99.1
Samples: 139

Max nTPM: 272.0
Min nTPM: 39.8
Std nTPM: 38.4
Median nTPM: 86.8
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 272.0
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 208.7
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 192.6
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 187.7
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 180.5
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 178.2
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 174.3
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 169.8
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 168.7
GTEX-1445S-0011-R2b-SM-5PNUH 60-69 years, male 164.4
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 159.4
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The Human Protein Atlas

The Human Protein Atlas project is funded
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