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RAB11B
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  • RAB11B
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:97.6 nTPM
HPA:97.6 nTPM
GTEx:127.3 nTPM
FANTOM5:165.4 Scaled Tags Per Million
Mouse:158.5 nTPM
Allen mouse:15.6 Expression energy

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max nTPM 97.6
Sample id Sample description nTPM
Amygdala
nTPM: 94.2
2814 Male, age 76, right hemisphere 118.8
2695 Female, age 67, right hemisphere 101.3
1987 Female, age 91, left hemisphere 83.9
2514 Male, age 75, right hemisphere 83.6
2517 Female, age 94, left hemisphere 83.6
Basal amygdala
nTPM: 89.3
2685 Female, age 94, left hemisphere 93.9
2827 Female, age 67, right hemisphere 93.2
1955 Male, age 76, both hemispheres 91.9
2609 Male, age 75, right hemisphere 90.6
2243 Female, age 91, right hemisphere 84.1
2110 Male, age 80, left hemisphere 82.2
Central amygdala
nTPM: 96.8
1905 Male, age 76, both hemispheres 106.2
2826 Female, age 94, left hemisphere 104.0
2515 Male, age 75, right hemisphere 92.4
2701 Female, age 91, right hemisphere 92.4
2239 Male, age 80, left hemisphere 89.2
Corticomedial amygdala
nTPM: 79.8
2535 Female, age 67, right hemisphere 86.7
2242 Female, age 91, right hemisphere 80.9
2428 Male, age 75, right hemisphere 79.8
2829 Male, age 80, left hemisphere 78.9
2240 Male, age 76, both hemispheres 76.3
2429 Female, age 94, left hemisphere 76.1
Lateral amygdala
nTPM: 97.6
1883 Male, age 76, both hemispheres 104.3
2255 Female, age 91, right hemisphere 101.0
2534 Female, age 94, left hemisphere 100.2
2256 Male, age 80, left hemisphere 99.3
2830 Female, age 67, right hemisphere 91.3
2516 Male, age 75, right hemisphere 89.7
Stria terminalis, bed nucleus
nTPM: 83.6
2201 Male, age 74, unknown 93.6
1974 Female, age 91, both hemispheres 79.4
2486 Female, age 94, both hemispheres 77.9

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 127.3
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 127.3
Samples: 152

Max nTPM: 186.3
Min nTPM: 66.8
Std nTPM: 22.4
Median nTPM: 128.9
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 186.3
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 174.8
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 172.7
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 168.0
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 167.2
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 166.7
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 164.2
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 162.4
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 161.8
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 160.7
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 160.4
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 160.3
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 160.3
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 160.2
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 159.4
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 159.3
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 156.5
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 155.4
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 155.3
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 152.8
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 152.5
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 151.0
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 150.4
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 149.0
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 148.4
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 148.3
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 148.1
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 147.5
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 147.1
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 147.1
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 146.5
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 146.0
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 144.8
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 144.3
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 143.7
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 143.1
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 143.1
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 143.0
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 142.1
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 141.9
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 140.9
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 140.8
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 140.2
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 139.9
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 139.3
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 138.7
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 138.3
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 137.8
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 137.7
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 137.5
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 137.4
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 137.2
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 137.0
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 136.6
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 136.5
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 135.9
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 134.8
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 134.0
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 133.7
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 133.3
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 133.0
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 132.6
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 132.6
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 132.2
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 132.1
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 132.0
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 131.7
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 130.6
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 130.2
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 130.0
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 129.8
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 129.6
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 129.5
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 129.5
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 129.1
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 129.0
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 128.9
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 128.2
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 127.9
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 127.3
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 126.8
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 126.7
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 126.6
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 126.1
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 126.1
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 125.7
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 125.7
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 125.6
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 124.5
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 123.2
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 122.8
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 122.6
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 122.1
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 122.1
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 121.7
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 121.7
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 121.7
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 121.3
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 120.4
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 119.9
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 118.7
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 118.3
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 117.4
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 117.3
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 116.9
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 115.7
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 115.2
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 114.6
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 114.5
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 113.8
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 112.5
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 111.7
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 110.9
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 110.3
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 110.0
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 109.6
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 109.3
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 109.0
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 108.8
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 108.5
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 108.1
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 106.7
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 106.4
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 106.0
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 105.3
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 105.1
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 104.8
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 104.8
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 104.5
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 104.3
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 102.6
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 102.6
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 102.1
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 98.4
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 98.2
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 98.1
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 97.6
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 97.5
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 97.4
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 97.2
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 96.6
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 93.8
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 93.0
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 90.7
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 90.0
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 87.8
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 85.7
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 85.5
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 84.2
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 78.9
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 69.3
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 66.8
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 165.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 165.4
FF:10151-102I7 76 years, female 165.4

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 158.5
Mouse sample Sample description nTPM
Amygdala
nTPM: 158.5
Samples: 4

Max nTPM: 185.7
Min nTPM: 145.1
Sample A Male 155.6
Sample B Male 147.6
Sample C Female 185.7
Sample D Female 145.1

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 15.6
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 15.6
69816739 Antisense, RP_050510_01_G07, Mouse strain C57BL/6J (56 days, male) 30.9
69448990 Antisense, RP_050419_03_A09, Mouse strain C57BL/6J (56 days, male) 0.2

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