MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:121.8 nTPM
HPA:121.8 nTPM
GTEx:148.3 nTPM
FANTOM5:211.6 Scaled Tags Per Million
Mouse:123.1 nTPM
Allen mouse:12.0 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 121.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 111.1
2586 Male, age 75, left hemisphere 127.4
2019 Male, age 18, unknown 121.2
1833 Male, age 53, unknown 113.1
1830 Male, age 51, unknown 111.0
2828 Female, age 72, unknown 110.3
2666 Male, age 74, left hemisphere 109.5
2411 Female, age 72, unknown 108.1
1870 Female, age 42, unknown 107.2
1827 Male, age 72, unknown 101.7
2219 Male, age 76, both hemispheres 101.7
Dorsal raphe nucleus
nTPM: 95.4
2750 Male, age 76, both hemispheres 111.2
1828 Male, age 53, unknown 103.7
2047 Male, age 72, unknown 91.1
2016 Female, age 72, unknown 90.3
2298 Female, age 72, unknown 80.9
Inferior colliculus
nTPM: 96.9
2849 Male, age 72, unknown 105.8
1848 Female, age 42, unknown 99.8
1890 Male, age 53, unknown 96.1
2097 Female, age 72, unknown 85.8
Median raphe nucleus
nTPM: 101.1
2220 Male, age 76, midline 101.1
Pedunculopontine tegmental nucleus
nTPM: 99.1
2334 Male, age 80, both hemispheres 107.5
1921 Female, age 85, both hemispheres 96.0
2338 Male, age 61, both hemispheres 93.7
Periaquaductal grey, anterior
nTPM: 103.2
2502 Female, age 75, unknown 111.1
1947 Male, age 18, unknown 101.2
1795 Male, age 51, unknown 97.4
Periaquaductal grey, dorsal
nTPM: 90.3
2850 Male, age 76, both hemispheres 101.1
2464 Female, age 72, unknown 93.5
1831 Male, age 72, unknown 90.1
1840 Male, age 53, unknown 76.4
Periaquaductal grey, lateral
nTPM: 92.8
2272 Male, age 74, both hemispheres 103.8
2140 Male, age 76, both hemispheres 95.0
2053 Male, age 18, unknown 79.6
Pretectal area
nTPM: 102.8
2007 Male, age 72, unknown 119.1
1817 Female, age 42, unknown 115.4
2667 Female, age 75, unknown 110.4
1815 Male, age 53, unknown 108.4
1944 Female, age 72, unknown 104.5
2407 Male, age 75, both hemispheres 103.7
1816 Male, age 51, unknown 101.3
2316 Male, age 76, right hemisphere 96.3
2825 Male, age 18, unknown 94.5
2273 Male, age 74, both hemispheres 91.2
2224 Female, age 72, unknown 86.2
Red nucleus
nTPM: 121.8
2785 Male, age 18, unknown 130.7
2227 Male, age 72, unknown 129.7
2769 Male, age 72, unknown 129.2
1904 Male, age 53, unknown 128.0
1865 Male, age 51, unknown 127.2
2588 Male, age 74, left hemisphere 125.3
2584 Male, age 75, left hemisphere 119.5
2823 Male, age 76, right hemisphere 118.6
2503 Female, age 72, unknown 118.2
1821 Female, age 72, unknown 117.8
1954 Female, age 42, unknown 114.3
2725 Female, age 75, unknown 102.9
Substantia nigra
nTPM: 99.9
2699 Male, age 18, unknown 115.3
1941 Male, age 53, unknown 106.4
2583 Male, age 75, right hemisphere 106.1
1916 Female, age 42, unknown 105.9
1851 Male, age 51, unknown 105.7
1889 Female, age 72, unknown 105.4
2665 Male, age 74, both hemispheres 102.0
2590 Female, age 75, unknown 100.3
2409 Female, age 72, unknown 79.1
2241 Male, age 72, unknown 72.7
Superior colliculus
nTPM: 104.7
2664 Male, age 75, both hemispheres 114.4
1995 Male, age 72, unknown 111.6
1913 Female, age 42, unknown 111.1
1796 Male, age 53, unknown 105.4
2668 Female, age 75, unknown 104.6
1839 Male, age 51, unknown 102.4
2087 Female, age 72, unknown 102.0
1895 Male, age 76, right hemisphere 100.6
2261 Male, age 18, unknown 97.6
2587 Male, age 74, left hemisphere 96.7
Ventral tegmental area
nTPM: 103.2
2223 Female, age 72, unknown 115.1
2218 Male, age 76, both hemispheres 110.1
2410 Female, age 72, unknown 109.3
1942 Male, age 51, unknown 100.2
1915 Female, age 42, unknown 94.7
2021 Male, age 53, unknown 90.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 148.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 148.3
Samples: 139

Max nTPM: 233.0
Min nTPM: 79.7
Std nTPM: 22.7
Median nTPM: 147.5
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 233.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 204.5
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 202.4
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 201.2
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 196.9
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 194.4
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 194.0
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 185.3
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 184.8
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 182.7
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 176.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 211.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 211.6
FF:10158-103A5 76 years, female 211.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 123.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 123.1
Samples: 4

Max nTPM: 133.3
Min nTPM: 114.6
Sample A Male 133.3
Sample B Male 114.6
Sample C Female 117.4
Sample D Female 127.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 12.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 12.0
69816739 Antisense, RP_050510_01_G07, Mouse strain C57BL/6J (56 days, male) 23.8
69448990 Antisense, RP_050419_03_A09, Mouse strain C57BL/6J (56 days, male) 0.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.