BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:1.1 nTPM
HPA:1.1 nTPM
GTEx:1.3 nTPM
FANTOM5:5.1 Scaled Tags Per Million
Pig:70.6 nTPM
Mouse:1.1 nTPM
Allen mouse:0.2 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA044587
Glial cells Medium
Neuronal cells Medium



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 1.1
Sample id Sample description nTPM
Caudate nucleus
nTPM: 0.7
2288 Male, age 75, left hemisphere 0.9
2289 Male, age 61, right hemisphere 0.9
2481 Female, age 94, left hemisphere 0.9
1854 Male, age 80, left hemisphere 0.8
1857 Female, age 85, left hemisphere 0.7
1781 Male, age 74, unknown 0.6
2846 Female, age 79, unknown 0.6
2290 Female, age 72, unknown 0.5
Claustrum
nTPM: 0.7
2392 Female, age 94, both hemispheres 1.0
2196 Female, age 79, unknown 0.9
2491 Male, age 75, both hemispheres 0.9
1956 Male, age 74, unknown 0.8
2568 Male, age 61, both hemispheres 0.8
2292 Female, age 85, both hemispheres 0.7
2198 Male, age 80, both hemispheres 0.6
2284 Female, age 91, both hemispheres 0.5
2645 Female, age 72, unknown 0.5
Globus pallidus, externus
nTPM: 1.1
2772 Female, age 79, unknown 1.4
1996 Male, age 80, right hemisphere 1.2
2567 Female, age 72, unknown 1.2
2646 Male, age 61, right hemisphere 1.1
2395 Male, age 75, both hemispheres 0.9
Globus pallidus, internus
nTPM: 1.0
2037 Male, age 80, right hemisphere 1.3
2778 Female, age 91, both hemispheres 1.2
2111 Female, age 85, right hemisphere 1.1
1818 Male, age 74, unknown 1.0
2287 Male, age 75, right hemisphere 1.0
2566 Female, age 72, unknown 0.9
2483 Female, age 94, right hemisphere 0.8
Nucleus accumbens
nTPM: 0.8
2698 Female, age 72, unknown 1.1
2391 Female, age 94, left hemisphere 1.0
2732 Male, age 80, right hemisphere 1.0
1783 Male, age 74, unknown 0.9
2824 Male, age 61, right hemisphere 0.9
1856 Female, age 91, right hemisphere 0.7
2286 Male, age 75, left hemisphere 0.6
1806 Female, age 85, left hemisphere 0.5
Nucleus basalis of Meynert
nTPM: 0.8
2393 Male, age 80, right hemisphere 0.9
2821 Male, age 75, both hemispheres 0.9
2569 Male, age 61, both hemispheres 0.8
2484 Female, age 94, left hemisphere 0.7
Nucleus of the diagonal band
nTPM: 0.7
1812 Female, age 91, both hemispheres 1.1
1979 Male, age 74, unknown 0.7
2029 Male, age 61, right hemisphere 0.7
2775 Male, age 80, right hemisphere 0.7
2195 Female, age 85, both hemispheres 0.5
Olfactory tubercle
nTPM: 0.7
1846 Male, age 80, right hemisphere 0.8
1998 Female, age 91, both hemispheres 0.7
2487 Female, age 94, left hemisphere 0.7
2856 Male, age 75, right hemisphere 0.6
Putamen
nTPM: 0.7
1838 Male, age 80, right hemisphere 0.9
1829 Male, age 74, unknown 0.8
2482 Female, age 94, left hemisphere 0.8
1937 Female, age 91, right hemisphere 0.7
2466 Female, age 79, unknown 0.7
2647 Male, age 75, left hemisphere 0.7
2489 Female, age 72, unknown 0.6
Septal nuclei
nTPM: 0.9
2629 Female, age 94, right hemisphere 1.2
2009 Female, age 91, both hemispheres 1.0
2199 Male, age 80, right hemisphere 1.0
2394 Male, age 61, left hemisphere 1.0
2059 Female, age 85, both hemispheres 0.7
1960 Male, age 74, unknown 0.5
2031 Female, age 72, unknown 0.5

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 1.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 1.3
Samples: 246

Max nTPM: 4.7
Min nTPM: 0.0
Std nTPM: 0.8
Median nTPM: 1.1
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 4.7
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 4.1
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 3.9
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 3.9
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 3.8
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 3.5
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 3.4
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 3.4
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 3.3
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 3.2
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 3.2
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 1.2
Samples: 246

Max nTPM: 9.2
Min nTPM: 0.0
Std nTPM: 0.9
Median nTPM: 1.0
GTEX-P44H-0011-R6A-SM-2XCF3 40-49 years, male 9.2
GTEX-QDT8-0011-R6A-SM-32PKI 30-39 years, female 4.0
GTEX-OHPN-0011-R6A-SM-2I5FH 60-69 years, female 3.9
GTEX-T5JC-0011-R6A-SM-D3L87 20-29 years, male 3.6
GTEX-PWO3-0011-R6A-SM-2I5F3 60-69 years, female 3.5
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 3.2
GTEX-13OW8-0011-R6b-SM-5L3I3 60-69 years, male 3.1
GTEX-1H1ZS-0011-R6b-SM-A9G1F 70-79 years, male 3.1
GTEX-1I1GS-0011-R6b-SM-CMKHE 60-69 years, male 3.1
GTEX-15EO6-0011-R6a-SM-7KULK 50-59 years, male 3.0
GTEX-QMR6-0011-R6A-SM-32PKP 50-59 years, male 3.0
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Brain - Putamen (basal ganglia)
Average nTPM: 1.3
Samples: 205

Max nTPM: 5.0
Min nTPM: 0.0
Std nTPM: 0.7
Median nTPM: 1.1
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 5.0
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 3.9
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 3.6
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 3.1
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 3.0
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 3.0
GTEX-13CZV-0011-R7b-SM-5LZXH 60-69 years, male 2.9
GTEX-1H23P-0011-R7b-SM-CKZP2 60-69 years, male 2.8
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 2.6
GTEX-1H1CY-0011-R7a-SM-CJI32 60-69 years, female 2.6
GTEX-1OJC4-0011-R7a-SM-EYYX4 50-59 years, female 2.6
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 5.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 2.8
FF:10164-103B2 76 years, female 2.8
Globus pallidus
Scaled Tags Per Million: 5.1
FF:10175-103C4 60 years, female 5.5
FF:10161-103A8 76 years, female 4.6
Nucleus accumbens
Scaled Tags Per Million: 3.2
FF:10037-101F1 23-56 years, mixed 3.2
Putamen
Scaled Tags Per Million: 2.9
FF:10176-103C5 60 years, female 2.9

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 70.6
Pig sample Sample description nTPM
Caudate
nTPM: 31.5
Samples: 4

Max nTPM: 35.4
Min nTPM: 27.5
Sample A Female 30.6
Sample B Female 32.5
Sample C Male 35.4
Sample D Male 27.5
Putamen
nTPM: 70.6
Samples: 4

Max nTPM: 102.4
Min nTPM: 46.8
Sample A Female 102.4
Sample B Female 46.8
Sample C Male 59.8
Sample D Male 73.5
Septum
nTPM: 48.6
Samples: 4

Max nTPM: 57.3
Min nTPM: 43.3
Sample A Female 45.0
Sample B Female 43.3
Sample C Male 48.8
Sample D Male 57.3
Ventral pallidum
nTPM: 66.7
Samples: 4

Max nTPM: 90.5
Min nTPM: 29.6
Sample A Female 29.6
Sample B Female 61.1
Sample C Male 90.5
Sample D Male 85.4

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 1.1
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 1.1
Samples: 4

Max nTPM: 1.4
Min nTPM: 0.8
Sample A Male 1.4
Sample B Male 0.8
Sample C Female 1.0
Sample D Female 1.1
Septum
nTPM: 0.9
Samples: 4

Max nTPM: 1.1
Min nTPM: 0.7
Sample A Male 0.8
Sample B Male 0.7
Sample C Female 1.1
Sample D Female 1.0
Ventral forebrain
nTPM: 0.6
Samples: 4

Max nTPM: 0.8
Min nTPM: 0.2
Sample A Male 0.7
Sample B Male 0.8
Sample C Female 0.2
Sample D Female 0.6

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.2
70305156 Antisense, RP_050609_03_D05, Mouse strain C57BL/6J (56 days, male) 0.2
Pallidum
Expression energy: 0.1
70305156 Antisense, RP_050609_03_D05, Mouse strain C57BL/6J (56 days, male) 0.1

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