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TISSUE SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN OVARY
PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:59.5 nTPM
HPA:59.5 nTPM
GTEx:54.4 nTPM
FANTOM5:105.8 Scaled Tags Per Million

SMALL INTESTINE - Annotated protein expression
Pending normal tissue analysis

SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Read more
Average nTPM 59.5
overview
Male, age 65
Small intestine sample 232
nTPM: 27.5
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 103.1
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 53.4
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 54

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 54.4
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 54.4
Samples: 187

Max nTPM: 234.6
Min nTPM: 5.0
Std nTPM: 51.6
Median nTPM: 32.2
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 234.6
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 232.2
GTEX-ZTSS-0926-SM-59865 40-49 years, male 220.3
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 211.2
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 201.7
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 189.8
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 187.2
GTEX-111YS-1426-SM-5GID8 60-69 years, male 185.5
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 180.6
GTEX-YFCO-1326-SM-664NV 40-49 years, male 175.6
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 174.3
GTEX-14PN3-2026-SM-68729 60-69 years, female 172.6
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 153.0
GTEX-1122O-1326-SM-5H11F 60-69 years, female 152.1
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 150.3
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 148.5
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 148.2
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 135.2
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 131.9
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 130.5
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 125.1
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 121.1
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 115.2
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 115.2
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 109.2
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 102.3
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 102.2
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 101.4
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 100.2
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 96.8
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 96.4
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 95.0
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 94.6
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 94.0
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 92.2
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 89.9
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 89.9
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 89.7
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 87.9
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 87.9
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 87.4
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 81.1
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 80.8
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 80.5
GTEX-1C475-1426-SM-793CH 40-49 years, female 80.5
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 78.0
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 77.8
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 76.8
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 76.5
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 76.0
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 71.7
GTEX-14PK6-1626-SM-6871I 70-79 years, female 71.1
GTEX-144GM-1026-SM-79OKU 20-29 years, male 69.0
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 68.7
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 67.7
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 63.8
GTEX-13113-1226-SM-5EGHT 60-69 years, female 62.6
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 60.6
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 59.5
GTEX-14PKU-1626-SM-6871C 40-49 years, female 55.8
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 55.6
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 55.4
GTEX-13O61-1326-SM-5KM31 60-69 years, male 54.8
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 53.5
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 53.1
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 51.8
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 50.6
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 50.5
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 50.1
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 49.8
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 49.7
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 49.1
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 48.9
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 47.7
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 47.7
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 46.5
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 45.1
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 44.4
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 44.3
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 44.2
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 43.8
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 42.1
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 41.7
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 41.5
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 41.4
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 38.6
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 38.3
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 37.4
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 37.3
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 36.8
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 35.8
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 35.8
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 35.5
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 32.2
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 32.2
GTEX-117YX-0326-SM-5GICL 50-59 years, male 32.1
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 31.7
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 30.5
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 30.3
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 29.8
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 28.4
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 28.2
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 27.7
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 27.4
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 26.7
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 26.7
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 26.6
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 26.5
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 25.9
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 25.5
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 25.5
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 24.8
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 24.7
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 24.2
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 24.2
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 22.9
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 22.7
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 22.5
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 21.8
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 21.5
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 21.2
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 21.1
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 21.1
GTEX-1192X-2526-SM-59868 50-59 years, male 20.9
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 20.9
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 20.7
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 20.2
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 19.8
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 19.7
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 19.7
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 19.6
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 19.6
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 19.5
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 19.4
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 19.3
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 19.1
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 18.6
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 18.6
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 18.6
GTEX-13111-1426-SM-5DUW3 50-59 years, male 18.5
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 18.4
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 18.3
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 18.2
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 18.2
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 18.2
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 17.9
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 17.8
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 17.6
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 17.5
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 17.4
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 16.8
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 16.5
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 16.3
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 15.9
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 15.6
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 15.6
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 15.0
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 14.9
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 14.9
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 14.4
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 14.1
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 14.1
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 13.9
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 13.1
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 13.0
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 12.6
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 12.6
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 11.8
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 11.1
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 10.4
GTEX-183FY-1626-SM-793D8 20-29 years, male 10.1
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 9.6
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 9.5
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 9.4
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 8.6
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 8.4
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 8.3
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 8.1
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 7.6
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 7.6
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 7.0
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 6.8
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 6.6
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 6.5
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 5.4
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 5.3
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 5.0
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 105.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 105.8
FF:10024-101D6 15,40,85 years, mixed 105.8

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