BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:41.8 nTPM
HPA:41.8 nTPM
GTEx:47.4 nTPM
FANTOM5:38.2 Scaled Tags Per Million
Pig:23.0 nTPM
Mouse:19.5 nTPM
Allen mouse:0.8 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA019858
Glial cells Not detected
Neuronal cells Not detected


BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 41.8
Sample id Sample description nTPM
Caudate nucleus
nTPM: 39.2
2290 Female, age 72, unknown 44.4
2289 Male, age 61, right hemisphere 42.8
2846 Female, age 79, unknown 41.1
2481 Female, age 94, left hemisphere 40.3
1857 Female, age 85, left hemisphere 38.8
1781 Male, age 74, unknown 38.2
1854 Male, age 80, left hemisphere 34.5
2288 Male, age 75, left hemisphere 33.4
Claustrum
nTPM: 39.0
2645 Female, age 72, unknown 50.0
2284 Female, age 91, both hemispheres 43.7
2568 Male, age 61, both hemispheres 43.6
2198 Male, age 80, both hemispheres 40.4
2491 Male, age 75, both hemispheres 37.9
2196 Female, age 79, unknown 36.3
1956 Male, age 74, unknown 35.5
2292 Female, age 85, both hemispheres 32.2
2392 Female, age 94, both hemispheres 31.1
Globus pallidus, externus
nTPM: 41.8
2646 Male, age 61, right hemisphere 52.3
2567 Female, age 72, unknown 47.5
1996 Male, age 80, right hemisphere 38.6
2772 Female, age 79, unknown 38.4
2395 Male, age 75, both hemispheres 32.3
Globus pallidus, internus
nTPM: 37.8
2483 Female, age 94, right hemisphere 49.0
2566 Female, age 72, unknown 39.4
1818 Male, age 74, unknown 38.4
2287 Male, age 75, right hemisphere 36.8
2037 Male, age 80, right hemisphere 36.5
2111 Female, age 85, right hemisphere 34.0
2778 Female, age 91, both hemispheres 30.7
Nucleus accumbens
nTPM: 34.8
1783 Male, age 74, unknown 39.5
1806 Female, age 85, left hemisphere 38.0
2698 Female, age 72, unknown 35.1
2824 Male, age 61, right hemisphere 35.0
2286 Male, age 75, left hemisphere 33.8
1856 Female, age 91, right hemisphere 33.6
2732 Male, age 80, right hemisphere 32.3
2391 Female, age 94, left hemisphere 30.8
Nucleus basalis of Meynert
nTPM: 39.2
2569 Male, age 61, both hemispheres 57.7
2484 Female, age 94, left hemisphere 35.1
2393 Male, age 80, right hemisphere 34.2
2821 Male, age 75, both hemispheres 29.7
Nucleus of the diagonal band
nTPM: 39.6
2775 Male, age 80, right hemisphere 42.9
2195 Female, age 85, both hemispheres 41.9
2029 Male, age 61, right hemisphere 39.5
1812 Female, age 91, both hemispheres 36.8
1979 Male, age 74, unknown 36.8
Olfactory tubercle
nTPM: 39.1
2856 Male, age 75, right hemisphere 42.8
1998 Female, age 91, both hemispheres 39.0
1846 Male, age 80, right hemisphere 37.6
2487 Female, age 94, left hemisphere 37.1
Putamen
nTPM: 40.6
2647 Male, age 75, left hemisphere 50.3
2489 Female, age 72, unknown 46.4
1829 Male, age 74, unknown 41.8
2466 Female, age 79, unknown 40.3
2482 Female, age 94, left hemisphere 36.2
1838 Male, age 80, right hemisphere 35.9
1937 Female, age 91, right hemisphere 33.3
Septal nuclei
nTPM: 39.6
1960 Male, age 74, unknown 48.5
2059 Female, age 85, both hemispheres 44.4
2394 Male, age 61, left hemisphere 39.3
2031 Female, age 72, unknown 38.6
2629 Female, age 94, right hemisphere 35.9
2199 Male, age 80, right hemisphere 35.5
2009 Female, age 91, both hemispheres 35.1

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 47.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 45.1
Samples: 246

Max nTPM: 83.5
Min nTPM: 11.7
Std nTPM: 12.5
Median nTPM: 43.6
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 83.5
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 81.6
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 80.6
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 79.6
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 77.8
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 76.8
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 75.7
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 75.6
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 75.6
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 73.4
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 73.3
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 45.1
Samples: 246

Max nTPM: 130.7
Min nTPM: 14.2
Std nTPM: 16.7
Median nTPM: 42.2
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 130.7
GTEX-13PDP-0011-R6b-SM-5O9D5 60-69 years, male 109.3
GTEX-1F75B-0011-R6a-SM-ARZMI 50-59 years, male 104.3
GTEX-X261-0011-R6B-SM-4E3J8 50-59 years, male 98.8
GTEX-ZV68-0011-R6a-SM-51MSR 50-59 years, female 91.3
GTEX-1F88E-0011-R6a-SM-CKZNW 60-69 years, female 90.4
GTEX-1E2YA-0011-R6b-SM-CE6R2 50-59 years, male 87.2
GTEX-1H4P4-0011-R6a-SM-ARZLR 50-59 years, male 84.6
GTEX-1A8G6-0011-R6b-SM-7P8PE 60-69 years, male 83.5
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 82.4
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 81.9
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Brain - Putamen (basal ganglia)
Average nTPM: 47.4
Samples: 205

Max nTPM: 88.2
Min nTPM: 16.8
Std nTPM: 13.3
Median nTPM: 45.6
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 88.2
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 87.4
GTEX-1F52S-0011-R7b-SM-9QEH8 60-69 years, female 85.8
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 83.8
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 79.2
GTEX-ZF28-0011-R7a-SM-4WKF5 60-69 years, male 78.4
GTEX-139TS-0011-R7a-SM-5K7X7 60-69 years, male 77.2
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 76.8
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 74.1
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 72.4
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 72.3
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 38.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 38.2
FF:10164-103B2 76 years, female 38.2
Globus pallidus
Scaled Tags Per Million: 20.2
FF:10161-103A8 76 years, female 28.7
FF:10175-103C4 60 years, female 11.8
Nucleus accumbens
Scaled Tags Per Million: 33.6
FF:10037-101F1 23-56 years, mixed 33.6
Putamen
Scaled Tags Per Million: 33.9
FF:10176-103C5 60 years, female 33.9

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 23.0
Pig sample Sample description nTPM
Caudate
nTPM: 23.0
Samples: 4

Max nTPM: 27.9
Min nTPM: 18.1
Sample A Female 18.1
Sample B Female 24.4
Sample C Male 27.9
Sample D Male 21.6
Putamen
nTPM: 20.8
Samples: 4

Max nTPM: 25.7
Min nTPM: 15.4
Sample A Female 15.4
Sample B Female 18.6
Sample C Male 25.7
Sample D Male 23.6
Septum
nTPM: 16.8
Samples: 4

Max nTPM: 18.3
Min nTPM: 14.6
Sample A Female 15.8
Sample B Female 14.6
Sample C Male 18.3
Sample D Male 18.3
Ventral pallidum
nTPM: 19.8
Samples: 4

Max nTPM: 28.5
Min nTPM: 15.0
Sample A Female 15.0
Sample B Female 19.2
Sample C Male 28.5
Sample D Male 16.5

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 19.5
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 19.5
Samples: 4

Max nTPM: 25.1
Min nTPM: 15.8
Sample A Male 19.1
Sample B Male 25.1
Sample C Female 15.8
Sample D Female 18.1
Septum
nTPM: 15.4
Samples: 4

Max nTPM: 18.0
Min nTPM: 13.8
Sample A Male 18.0
Sample B Male 14.6
Sample C Female 15.1
Sample D Female 13.8
Ventral forebrain
nTPM: 19.1
Samples: 4

Max nTPM: 22.1
Min nTPM: 16.5
Sample A Male 19.3
Sample B Male 18.5
Sample C Female 22.1
Sample D Female 16.5

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.8
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.8
74509597 Antisense, RP_060208_01_A11, Mouse strain C57BL/6J (56 days, male) 0.8
Pallidum
Expression energy: 0.6
74509597 Antisense, RP_060208_01_A11, Mouse strain C57BL/6J (56 days, male) 0.6

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