BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:5.5 nTPM
HPA:5.5 nTPM
GTEx:14.0 nTPM
FANTOM5:4.0 Scaled Tags Per Million
Pig:3.8 nTPM
Mouse:0.4 nTPM
Allen mouse:0.5 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

CAUDATE - Antibody stainingi
Antibody HPA039049Antibody HPA039050
Glial cells LowNot detected
Neuronal cells MediumMedium





BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 5.5
Sample id Sample description nTPM
Caudate nucleus
nTPM: 5.5
2289 Male, age 61, right hemisphere 7.0
2290 Female, age 72, unknown 6.5
1857 Female, age 85, left hemisphere 6.0
2288 Male, age 75, left hemisphere 5.8
1781 Male, age 74, unknown 4.7
2846 Female, age 79, unknown 4.7
1854 Male, age 80, left hemisphere 4.6
2481 Female, age 94, left hemisphere 4.6
Claustrum
nTPM: 4.4
2491 Male, age 75, both hemispheres 5.8
2292 Female, age 85, both hemispheres 4.8
2284 Female, age 91, both hemispheres 4.7
2198 Male, age 80, both hemispheres 4.5
2568 Male, age 61, both hemispheres 4.5
2645 Female, age 72, unknown 4.4
2196 Female, age 79, unknown 3.7
2392 Female, age 94, both hemispheres 3.7
1956 Male, age 74, unknown 3.6
Globus pallidus, externus
nTPM: 4.2
2567 Female, age 72, unknown 5.8
1996 Male, age 80, right hemisphere 4.4
2772 Female, age 79, unknown 4.4
2646 Male, age 61, right hemisphere 3.9
2395 Male, age 75, both hemispheres 2.6
Globus pallidus, internus
nTPM: 3.9
2111 Female, age 85, right hemisphere 4.8
2566 Female, age 72, unknown 4.7
2778 Female, age 91, both hemispheres 4.1
1818 Male, age 74, unknown 3.8
2483 Female, age 94, right hemisphere 3.5
2037 Male, age 80, right hemisphere 3.2
2287 Male, age 75, right hemisphere 3.2
Nucleus accumbens
nTPM: 4.6
1783 Male, age 74, unknown 6.8
2824 Male, age 61, right hemisphere 6.2
1806 Female, age 85, left hemisphere 4.9
2286 Male, age 75, left hemisphere 4.9
1856 Female, age 91, right hemisphere 4.4
2732 Male, age 80, right hemisphere 4.2
2698 Female, age 72, unknown 3.2
2391 Female, age 94, left hemisphere 2.0
Nucleus basalis of Meynert
nTPM: 4.6
2484 Female, age 94, left hemisphere 6.4
2569 Male, age 61, both hemispheres 4.4
2393 Male, age 80, right hemisphere 4.3
2821 Male, age 75, both hemispheres 3.5
Nucleus of the diagonal band
nTPM: 4.0
2029 Male, age 61, right hemisphere 5.8
2775 Male, age 80, right hemisphere 4.6
2195 Female, age 85, both hemispheres 4.1
1979 Male, age 74, unknown 3.1
1812 Female, age 91, both hemispheres 2.6
Olfactory tubercle
nTPM: 4.3
1998 Female, age 91, both hemispheres 5.1
2487 Female, age 94, left hemisphere 4.8
2856 Male, age 75, right hemisphere 4.0
1846 Male, age 80, right hemisphere 3.5
Putamen
nTPM: 5.3
2466 Female, age 79, unknown 6.6
2647 Male, age 75, left hemisphere 6.3
2489 Female, age 72, unknown 5.9
1829 Male, age 74, unknown 5.4
1838 Male, age 80, right hemisphere 5.4
1937 Female, age 91, right hemisphere 3.8
2482 Female, age 94, left hemisphere 3.8
Septal nuclei
nTPM: 3.7
2059 Female, age 85, both hemispheres 5.3
1960 Male, age 74, unknown 4.8
2031 Female, age 72, unknown 3.8
2629 Female, age 94, right hemisphere 3.4
2009 Female, age 91, both hemispheres 3.3
2394 Male, age 61, left hemisphere 3.3
2199 Male, age 80, right hemisphere 2.4

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 14.0
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 13.1
Samples: 246

Max nTPM: 29.8
Min nTPM: 2.6
Std nTPM: 4.8
Median nTPM: 13.2
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 29.8
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 26.9
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 26.8
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 26.3
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 24.1
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 23.5
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 23.3
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 23.2
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 22.8
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 22.4
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 22.1
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 12.9
Samples: 246

Max nTPM: 29.0
Min nTPM: 3.6
Std nTPM: 4.3
Median nTPM: 12.6
GTEX-13FHO-0011-R6b-SM-5LZX1 60-69 years, male 29.0
GTEX-13NYB-0011-R6b-SM-5MR51 40-49 years, male 28.3
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 26.2
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 26.1
GTEX-X585-0011-R6A-SM-46MVJ 50-59 years, male 23.9
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 23.4
GTEX-1HUB1-0011-R6b-SM-ARU6W 60-69 years, male 23.3
GTEX-12ZZX-0011-R6a-SM-5HL8L 40-49 years, female 22.7
GTEX-11NV4-0011-R6a-SM-57WD5 60-69 years, male 22.2
GTEX-12WSC-0011-R6b-SM-5LU99 50-59 years, male 22.0
GTEX-18A6Q-0011-R6a-SM-7LG6R 60-69 years, male 21.5
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Brain - Putamen (basal ganglia)
Average nTPM: 14.0
Samples: 205

Max nTPM: 28.1
Min nTPM: 3.7
Std nTPM: 5.0
Median nTPM: 13.8
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 28.1
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 25.8
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 25.6
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 25.6
GTEX-13G51-0011-R7b-SM-5LZXG 60-69 years, male 25.4
GTEX-11NV4-0011-R7a-SM-57WDH 60-69 years, male 25.2
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 24.5
GTEX-139TT-0011-R7b-SM-5J2MN 60-69 years, male 24.1
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 23.9
GTEX-1GTWX-0011-R7a-SM-A96RO 60-69 years, male 23.6
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 22.5
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 4.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 3.5
FF:10164-103B2 76 years, female 3.5
Globus pallidus
Scaled Tags Per Million: 4.0
FF:10161-103A8 76 years, female 4.8
FF:10175-103C4 60 years, female 3.1
Nucleus accumbens
Scaled Tags Per Million: 2.2
FF:10037-101F1 23-56 years, mixed 2.2
Putamen
Scaled Tags Per Million: 4.0
FF:10176-103C5 60 years, female 4.0

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 3.8
Pig sample Sample description nTPM
Caudate
nTPM: 3.4
Samples: 4

Max nTPM: 4.0
Min nTPM: 3.0
Sample A Female 3.2
Sample B Female 4.0
Sample C Male 3.0
Sample D Male 3.3
Putamen
nTPM: 3.1
Samples: 4

Max nTPM: 4.0
Min nTPM: 2.2
Sample A Female 4.0
Sample B Female 2.9
Sample C Male 2.2
Sample D Male 3.4
Septum
nTPM: 3.8
Samples: 4

Max nTPM: 4.2
Min nTPM: 3.2
Sample A Female 4.2
Sample B Female 3.8
Sample C Male 3.9
Sample D Male 3.2
Ventral pallidum
nTPM: 3.8
Samples: 4

Max nTPM: 4.9
Min nTPM: 3.1
Sample A Female 3.1
Sample B Female 3.6
Sample C Male 4.9
Sample D Male 3.6

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 0.4
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 0.3
Samples: 4

Max nTPM: 0.7
Min nTPM: 0.1
Sample A Male 0.7
Sample B Male 0.3
Sample C Female 0.1
Sample D Female 0.2
Septum
nTPM: 0.4
Samples: 4

Max nTPM: 0.7
Min nTPM: 0.1
Sample A Male 0.7
Sample B Male 0.6
Sample C Female 0.1
Sample D Female 0.3
Ventral forebrain
nTPM: 0.3
Samples: 4

Max nTPM: 0.7
Min nTPM: 0.0
Sample A Male 0.7
Sample B Male 0.1
Sample C Female 0.2
Sample D Female 0.0

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.5
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.4
69407935 Antisense, RP_050414_02_F12, Mouse strain C57BL/6J (56 days, male) 0.4
Pallidum
Expression energy: 0.5
69407935 Antisense, RP_050414_02_F12, Mouse strain C57BL/6J (56 days, male) 0.5

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