MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:33.3 nTPM
HPA:33.3 nTPM
GTEx:28.7 nTPM
FANTOM5:85.2 Scaled Tags Per Million
Pig:11.8 nTPM
Mouse:11.9 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 33.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 32.0
1870 Female, age 42, unknown 34.3
2411 Female, age 72, unknown 33.7
1830 Male, age 51, unknown 33.2
2828 Female, age 72, unknown 32.8
1833 Male, age 53, unknown 32.4
2019 Male, age 18, unknown 32.2
1827 Male, age 72, unknown 30.7
2219 Male, age 76, both hemispheres 30.7
2586 Male, age 75, left hemisphere 30.2
2666 Male, age 74, left hemisphere 29.6
Dorsal raphe nucleus
nTPM: 31.7
2298 Female, age 72, unknown 32.9
2016 Female, age 72, unknown 32.7
2750 Male, age 76, both hemispheres 31.7
1828 Male, age 53, unknown 31.0
2047 Male, age 72, unknown 29.9
Inferior colliculus
nTPM: 30.6
1848 Female, age 42, unknown 31.5
1890 Male, age 53, unknown 30.3
2097 Female, age 72, unknown 30.3
2849 Male, age 72, unknown 30.3
Median raphe nucleus
nTPM: 31.5
2220 Male, age 76, midline 31.5
Pedunculopontine tegmental nucleus
nTPM: 31.7
2338 Male, age 61, both hemispheres 32.3
2334 Male, age 80, both hemispheres 32.1
1921 Female, age 85, both hemispheres 30.7
Periaquaductal grey, anterior
nTPM: 30.7
2502 Female, age 75, unknown 31.4
1947 Male, age 18, unknown 30.6
1795 Male, age 51, unknown 30.2
Periaquaductal grey, dorsal
nTPM: 31.8
2850 Male, age 76, both hemispheres 33.4
2464 Female, age 72, unknown 31.6
1831 Male, age 72, unknown 31.1
1840 Male, age 53, unknown 31.1
Periaquaductal grey, lateral
nTPM: 33.3
2272 Male, age 74, both hemispheres 35.1
2140 Male, age 76, both hemispheres 33.9
2053 Male, age 18, unknown 31.0
Pretectal area
nTPM: 30.9
2273 Male, age 74, both hemispheres 33.4
2316 Male, age 76, right hemisphere 33.3
2224 Female, age 72, unknown 33.1
2667 Female, age 75, unknown 31.5
1815 Male, age 53, unknown 30.8
2825 Male, age 18, unknown 30.6
1817 Female, age 42, unknown 30.4
2007 Male, age 72, unknown 29.5
2407 Male, age 75, both hemispheres 29.2
1944 Female, age 72, unknown 28.9
1816 Male, age 51, unknown 28.7
Red nucleus
nTPM: 33.3
1904 Male, age 53, unknown 36.2
2769 Male, age 72, unknown 35.4
1821 Female, age 72, unknown 35.3
2227 Male, age 72, unknown 35.0
1865 Male, age 51, unknown 34.6
1954 Female, age 42, unknown 34.4
2823 Male, age 76, right hemisphere 33.3
2503 Female, age 72, unknown 33.0
2725 Female, age 75, unknown 32.2
2785 Male, age 18, unknown 32.0
2588 Male, age 74, left hemisphere 29.1
2584 Male, age 75, left hemisphere 28.8
Substantia nigra
nTPM: 30.5
1851 Male, age 51, unknown 32.3
2699 Male, age 18, unknown 32.2
1889 Female, age 72, unknown 30.6
2590 Female, age 75, unknown 30.6
1916 Female, age 42, unknown 30.2
2583 Male, age 75, right hemisphere 30.2
2409 Female, age 72, unknown 30.1
2241 Male, age 72, unknown 29.8
2665 Male, age 74, both hemispheres 29.7
1941 Male, age 53, unknown 29.0
Superior colliculus
nTPM: 31.3
1913 Female, age 42, unknown 34.2
1995 Male, age 72, unknown 34.2
2261 Male, age 18, unknown 32.2
2587 Male, age 74, left hemisphere 31.6
1839 Male, age 51, unknown 30.9
1796 Male, age 53, unknown 30.7
1895 Male, age 76, right hemisphere 30.7
2668 Female, age 75, unknown 30.1
2087 Female, age 72, unknown 29.9
2664 Male, age 75, both hemispheres 28.4
Ventral tegmental area
nTPM: 32.0
2410 Female, age 72, unknown 33.5
2021 Male, age 53, unknown 32.8
2223 Female, age 72, unknown 32.4
2218 Male, age 76, both hemispheres 32.1
1942 Male, age 51, unknown 30.9
1915 Female, age 42, unknown 30.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 28.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 28.7
Samples: 139

Max nTPM: 59.9
Min nTPM: 10.6
Std nTPM: 8.9
Median nTPM: 26.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 59.9
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 52.5
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 51.9
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 51.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 48.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 47.3
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 47.0
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 46.2
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 43.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 43.2
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 41.8
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 85.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 85.2
FF:10158-103A5 76 years, female 85.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 11.8
Pig sample Sample description nTPM
Midbrain
nTPM: 9.1
Samples: 4

Max nTPM: 15.3
Min nTPM: 4.4
Sample A Female 15.3
Sample B Female 10.9
Sample C Male 4.4
Sample D Male 5.7
Periaqueductal gray
nTPM: 10.4
Samples: 3

Max nTPM: 11.1
Min nTPM: 9.6
Sample B Female 9.6
Sample C Male 11.1
Sample D Male 10.4
Substantia nigra
nTPM: 11.8
Samples: 4

Max nTPM: 12.9
Min nTPM: 10.1
Sample A Female 12.3
Sample B Female 11.9
Sample C Male 10.1
Sample D Male 12.9
Superior colliculi
nTPM: 10.7
Samples: 4

Max nTPM: 15.2
Min nTPM: 7.6
Sample A Female 11.4
Sample B Female 15.2
Sample C Male 7.6
Sample D Male 8.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 11.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 11.9
Samples: 4

Max nTPM: 13.5
Min nTPM: 9.2
Sample A Male 12.6
Sample B Male 9.2
Sample C Female 12.3
Sample D Female 13.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
71920285 Antisense, RP_051012_03_B11, Mouse strain C57BL/6J (56 days, male) 0.0

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.