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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Eye
Retina
RETINA - Expression summary
Protein expression
Retinai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Ganglion cells : Not detected
Inner nuclear layer: Not detected
Inner plexiform layer: Not detected
Limiting membrane: Not detected
Nerve fiber layer: Not detected
Outer plexiform layer: Not detected
Photoreceptor cells: High
Pigment epithelial cells: Not detected
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:2050.3 nTPM
GTEx:2050.3 nTPM
FANTOM5:1287.0 Scaled Tags Per Million
Pig:519.4 nTPM
Mouse:6931.1 nTPM

RETINA - Extended tissue profilei

For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.

, antibody HPA045118
Pigment epithelial cells Not detected
Photoreceptor cells High
Limiting membrane Not detected
Outer plexiform layer Not detected
Inner nuclear layer Not detected
Inner plexiform layer Not detected
Ganglion cells Not detected
Nerve fiber layer Not detected

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 2050.3
GTEx sample id Sample description nTPM
Retina
Average nTPM: 2050.3
Samples: 105

Max nTPM: 5668.5
Min nTPM: 207.1
Std nTPM: 1182.1
Median nTPM:
352_1 62 years, male 5668.5
354_1 81 years, female 5076.6
172_1 72 years, female 4927.7
350_1 84 years, female 4499.9
349_1 83 years, male 4382.2
386_1 76 years, male 4080.9
163_1 78 years, male 4003.9
243_1 75 years, male 3819.9
218_1 71 years, female 3699.3
319_1 81 years, male 3677.5
394_1 75 years, female 3585.5
356_1 87 years, female 3535.3
425_1 59 years, female 3519.0
379_1 60 years, male 3496.6
447_1 81 years, male 3467.5
321_1 62 years, female 3437.3
355_1 70 years, female 3420.4
6_1 73 years, female 3416.1
177_1 74 years, male 3307.4
376_1 75 years, female 3141.0
353_1 82 years, female 3091.4
377_1 82 years, female 3091.3
335_1 73 years, female 3020.3
480_1 63 years, male 2942.3
292_1 71 years, male 2866.2
317_1 60 years, male 2776.6
404_1 82 years, female 2728.9
351_1 91 years, male 2693.7
389_1 86 years, female 2668.8
503_1 68 years, male 2592.1
406_1 79 years, male 2563.2
318_1 68 years, male 2543.3
286_1 68 years, female 2541.1
517_1 88 years, male 2455.0
316_1 62 years, male 2448.3
99_1 64 years, male 2350.3
347_1 72 years, male 2321.9
320_1 89 years, female 2313.4
229_1 69 years, female 2313.3
375_1 74 years, female 2311.5
115_1 83 years, male 2235.9
526_1 61 years, male 2200.8
506_1 65 years, male 2181.0
291_1 76 years, male 2174.6
293_1 68 years, female 2172.1
251_1 78 years, male 2103.7
173_1 67 years, male 2094.7
189_1 76 years, male 2094.2
384_1 83 years, male 2093.1
322_1 76 years, male 2089.0
452_1 88 years, female 2068.8
468_1 89 years, male 2048.7
348_1 84 years, male 1997.0
9_1 66 years, female 1985.5
246_1 77 years, male 1973.3
265_1 87 years, male 1936.1
324_1 76 years, male 1907.2
295_1 61 years, female 1896.1
264_1 73 years, female 1746.8
237_1 82 years, male 1739.2
2_1 77 years, female 1735.1
405_1 91 years, male 1693.1
396_1 62 years, male 1675.9
266_1 85 years, male 1638.3
217_1 76 years, male 1547.3
254_1 77 years, female 1537.1
145_1 84 years, male 1490.3
126_1 63 years, male 1449.3
518_1 75 years, female 1366.9
35_1 74 years, female 1322.3
120_1 70 years, female 1317.9
117_1 61 years, male 1316.3
499_1 55 years, female 1275.5
311_1 78 years, male 1274.0
4_1 88 years, female 1235.8
288_1 66 years, female 1215.6
137_1 83 years, male 1199.2
17_1 71 years, male 1159.6
18_1 88 years, male 1149.9
142_1 61 years, female 990.2
307_1 66 years, female 956.4
81_1 67 years, male 951.9
109_1 81 years, female 942.0
32_1 67 years, male 918.2
315_1 62 years, female 911.8
313_1 79 years, female 893.6
42_1 85 years, male 856.6
153_1 70 years, female 841.0
415_1 77 years, female 778.8
119_1 70 years, female 767.1
314_1 67 years, male 764.5
162_1 79 years, female 726.2
308_1 70 years, female 707.4
43_1 64 years, female 686.0
139_1 64 years, female 638.5
466_1 57 years, female 576.2
414_1 84 years, female 571.4
495_1 57 years, female 453.9
89_1 63 years, male 451.3
41_1 94 years, female 443.7
149_1 88 years, male 371.7
413_1 59 years, female 262.0
490_1 67 years, female 259.7
501_1 88 years, male 218.0
491_1 89 years, female 207.1
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 1287.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 1287.0
FF:10030-101E3 24-65 years, mixed 1287.0

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 519.4
Pig sample Sample description nTPM
Retina
nTPM: 519.5
Samples: 4

Max nTPM: 697.0
Min nTPM: 449.9
Sample A Female 458.3
Sample B Female 472.6
Sample C Male 697.0
Sample D Male 449.9

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 6931.1
Mouse sample Sample description nTPM
Retina
nTPM: 6931.1
Samples: 4

Max nTPM: 7799.7
Min nTPM: 6020.1
Sample A Male 7123.3
Sample B Male 6781.3
Sample C Female 7799.7
Sample D Female 6020.1

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by the Knut & Alice Wallenberg Foundation.