BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:45.4 nTPM
HPA:45.4 nTPM
GTEx:38.9 nTPM
FANTOM5:71.3 Scaled Tags Per Million
Pig:123.9 nTPM
Mouse:137.5 nTPM
Allen mouse:0.3 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 45.4
Sample id Sample description nTPM
Caudate nucleus
nTPM: 29.5
2288 Male, age 75, left hemisphere 51.7
2481 Female, age 94, left hemisphere 45.2
2290 Female, age 72, unknown 33.1
1857 Female, age 85, left hemisphere 28.7
1854 Male, age 80, left hemisphere 26.1
2289 Male, age 61, right hemisphere 23.3
1781 Male, age 74, unknown 16.6
2846 Female, age 79, unknown 11.1
Claustrum
nTPM: 41.4
2568 Male, age 61, both hemispheres 62.3
2198 Male, age 80, both hemispheres 57.7
2284 Female, age 91, both hemispheres 55.3
2645 Female, age 72, unknown 44.0
1956 Male, age 74, unknown 38.2
2392 Female, age 94, both hemispheres 33.2
2491 Male, age 75, both hemispheres 30.3
2196 Female, age 79, unknown 26.5
2292 Female, age 85, both hemispheres 25.2
Globus pallidus, externus
nTPM: 13.6
2646 Male, age 61, right hemisphere 23.5
2772 Female, age 79, unknown 15.9
1996 Male, age 80, right hemisphere 14.6
2395 Male, age 75, both hemispheres 8.6
2567 Female, age 72, unknown 5.6
Globus pallidus, internus
nTPM: 14.4
2483 Female, age 94, right hemisphere 29.0
2287 Male, age 75, right hemisphere 23.8
1818 Male, age 74, unknown 23.7
2037 Male, age 80, right hemisphere 16.9
2778 Female, age 91, both hemispheres 6.5
2566 Female, age 72, unknown 1.3
2111 Female, age 85, right hemisphere 0.0
Nucleus accumbens
nTPM: 23.9
2286 Male, age 75, left hemisphere 48.1
1856 Female, age 91, right hemisphere 27.6
2391 Female, age 94, left hemisphere 26.6
1806 Female, age 85, left hemisphere 23.5
2698 Female, age 72, unknown 21.8
2824 Male, age 61, right hemisphere 20.0
1783 Male, age 74, unknown 14.6
2732 Male, age 80, right hemisphere 8.6
Nucleus basalis of Meynert
nTPM: 14.7
2569 Male, age 61, both hemispheres 22.5
2484 Female, age 94, left hemisphere 15.2
2393 Male, age 80, right hemisphere 13.3
2821 Male, age 75, both hemispheres 7.9
Nucleus of the diagonal band
nTPM: 45.4
2195 Female, age 85, both hemispheres 53.5
2775 Male, age 80, right hemisphere 52.1
2029 Male, age 61, right hemisphere 43.4
1979 Male, age 74, unknown 39.2
1812 Female, age 91, both hemispheres 39.0
Olfactory tubercle
nTPM: 43.2
1998 Female, age 91, both hemispheres 48.4
2856 Male, age 75, right hemisphere 45.0
1846 Male, age 80, right hemisphere 42.0
2487 Female, age 94, left hemisphere 37.3
Putamen
nTPM: 17.7
2482 Female, age 94, left hemisphere 33.8
1838 Male, age 80, right hemisphere 17.7
1937 Female, age 91, right hemisphere 17.6
2647 Male, age 75, left hemisphere 17.0
2489 Female, age 72, unknown 16.4
1829 Male, age 74, unknown 13.1
2466 Female, age 79, unknown 8.3
Septal nuclei
nTPM: 32.4
1960 Male, age 74, unknown 42.7
2629 Female, age 94, right hemisphere 41.7
2059 Female, age 85, both hemispheres 34.5
2009 Female, age 91, both hemispheres 33.0
2031 Female, age 72, unknown 31.9
2199 Male, age 80, right hemisphere 31.3
2394 Male, age 61, left hemisphere 11.4

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 38.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 38.9
Samples: 246

Max nTPM: 70.3
Min nTPM: 14.9
Std nTPM: 9.0
Median nTPM: 38.5
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 70.3
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 64.8
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 63.3
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 61.0
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 60.6
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 60.0
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 58.1
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 57.0
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 56.6
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 56.1
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 55.5
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 34.5
Samples: 246

Max nTPM: 66.6
Min nTPM: 12.1
Std nTPM: 8.6
Median nTPM: 34.6
GTEX-131XW-0011-R6b-SM-5K7XY 50-59 years, female 66.6
GTEX-145MH-0011-R6a-SM-5PNZ7 50-59 years, male 59.8
GTEX-139TT-0011-R6b-SM-5J2ON 60-69 years, male 58.0
GTEX-16YQH-0011-R6b-SM-7938T 30-39 years, male 55.0
GTEX-ZVZQ-0011-R6b-SM-57WAY 60-69 years, female 53.7
GTEX-13X6J-0011-R6a-SM-5PNUB 50-59 years, male 53.1
GTEX-11GSP-0011-R6b-SM-57WBQ 60-69 years, female 51.5
GTEX-1GN2E-0011-R6b-SM-9QEII 60-69 years, male 51.1
GTEX-1EKGG-0011-R6a-SM-CL538 60-69 years, male 50.6
GTEX-T6MN-0011-R6A-SM-32QP8 50-59 years, male 49.3
GTEX-T2IS-0011-R6A-SM-32QP2 20-29 years, female 49.2
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Brain - Putamen (basal ganglia)
Average nTPM: 33.6
Samples: 205

Max nTPM: 61.8
Min nTPM: 15.7
Std nTPM: 8.5
Median nTPM: 33.9
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 61.8
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 59.2
GTEX-NL3H-0011-R7a-SM-2I3G5 60-69 years, male 53.8
GTEX-15EO6-0011-R7a-SM-6M46Q 50-59 years, male 51.3
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 50.3
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 50.1
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 49.8
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 49.5
GTEX-1IOXB-0011-R7b-SM-CE6SM 50-59 years, male 48.9
GTEX-12ZZX-0011-R7b-SM-5DUVV 40-49 years, female 48.7
GTEX-12ZZY-0011-R7a-SM-5EGLB 60-69 years, male 48.2
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 71.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 63.6
FF:10164-103B2 76 years, female 63.6
Globus pallidus
Scaled Tags Per Million: 64.5
FF:10161-103A8 76 years, female 74.6
FF:10175-103C4 60 years, female 54.4
Nucleus accumbens
Scaled Tags Per Million: 68.9
FF:10037-101F1 23-56 years, mixed 68.9
Putamen
Scaled Tags Per Million: 71.3
FF:10176-103C5 60 years, female 71.3

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 123.9
Pig sample Sample description nTPM
Caudate
nTPM: 96.0
Samples: 4

Max nTPM: 103.0
Min nTPM: 84.6
Sample A Female 97.9
Sample B Female 103.0
Sample C Male 98.4
Sample D Male 84.6
Putamen
nTPM: 77.1
Samples: 4

Max nTPM: 78.8
Min nTPM: 73.0
Sample A Female 78.7
Sample B Female 73.0
Sample C Male 77.8
Sample D Male 78.8
Septum
nTPM: 123.9
Samples: 4

Max nTPM: 135.9
Min nTPM: 107.4
Sample A Female 119.5
Sample B Female 107.4
Sample C Male 132.7
Sample D Male 135.9
Ventral pallidum
nTPM: 99.5
Samples: 4

Max nTPM: 114.0
Min nTPM: 89.0
Sample A Female 101.7
Sample B Female 93.1
Sample C Male 114.0
Sample D Male 89.0

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 137.5
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 97.8
Samples: 4

Max nTPM: 108.1
Min nTPM: 88.2
Sample A Male 94.6
Sample B Male 100.4
Sample C Female 88.2
Sample D Female 108.1
Septum
nTPM: 137.5
Samples: 4

Max nTPM: 149.1
Min nTPM: 127.4
Sample A Male 127.4
Sample B Male 149.1
Sample C Female 127.9
Sample D Female 145.5
Ventral forebrain
nTPM: 96.4
Samples: 4

Max nTPM: 112.6
Min nTPM: 88.3
Sample A Male 88.3
Sample B Male 112.6
Sample C Female 95.3
Sample D Female 89.5

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.3
626 Antisense, RP_Baylor_103406, Mouse strain C57BL/6J (56 days, male) 0.3
625 Antisense, RP_Baylor_103406, Mouse strain C57BL/6J (56 days, male) 0.2
Pallidum
Expression energy: 0.3
626 Antisense, RP_Baylor_103406, Mouse strain C57BL/6J (56 days, male) 0.3
625 Antisense, RP_Baylor_103406, Mouse strain C57BL/6J (56 days, male) 0.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
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